You are querying gene by "AT5G16780".

Locus: AT5G16780 Alias: MDF

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone transportion Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes. 19000164

Basic gene information ( show / hide contents )

Locus AT5G16780 | Chromosome: 5 | Strand: -
Description Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes.
Alias
MDF( alias )
Gene model
AT5G16780.1 | From: 5517493 | To: 5522261
Sequence
AT5G16780.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
biological_process_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
mdf-1 19000164 mutant
mdf-2 19000164 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G16780.1 
length: 3061 
miRNA : ath-miR396a
length: 21 
 
mfe: -26.1 kcal/mol 
p-value: 0.032539 
 
position  1066 
target 5' U     G        G      G 
           GGUUU GAGAAAGU GUGGAA  
           UCAAG UUCUUUCG CACCUU  
miRNA  3' G              A        
 
 
target: AT5G16780.1 
length: 3061 
miRNA : ath-miR396b
length: 21 
 
mfe: -25.5 kcal/mol 
p-value: 0.038365 
 
position  1066 
target 5' U     G        G      G 
           GGUUU GAGAAAGU GUGGAA  
           UCAAG UUCUUUCG CACCUU  
miRNA  3' U              A        
 
 
target: AT5G16780.1 
length: 3061 
miRNA : ath-miR843
length: 21 
 
mfe: -27.4 kcal/mol 
p-value: 0.022690 
 
position  259 
target 5' U    U    G            G 
           UCCA UGAA GUUUGAUCUAGA  
           AGGU ACUU CGAGCUGGAUUU  
miRNA  3'      U                   
 
 
target: AT5G16780.1 
length: 3061 
miRNA : ath-miR867
length: 21 
 
mfe: -21.7 kcal/mol 
p-value: 0.043442 
 
position  2579 
target 5' G    C                A 
           UCCU AGU GGCCAUG UCAA  
           AGGA UUA UUGGUAC AGUU  
miRNA  3' A        U       A      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12307
AccessionTaxon
NP_197180 ( AT5G16780 )Arabidopsis thaliana
1600010193Ostreococcus tauri
estExt_fgenesh2_pg.C_990065Physcomitrella patens subsp. patens
29794.m003396Ricinus communis
NP_001046936Oryza sativa Japonica Group
1600010194Ostreococcus tauri
NP_188088Arabidopsis thaliana
192345Chlamydomonas reinhardtii
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF033431.4999999999999958E-111128727IPR005011SART-1 protein
PANTHERPTHR141521.0E-103193774IPR005011SART-1 protein