You are querying gene by "AT5G16770".

Locus: AT5G16770 Alias: AtMYB9

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT5G16770 | Chromosome: 5 | Strand: +
Description response to abscisic acid stimulus
Alias
AtMYB9( alias )
Gene model
AT5G16770.1 | From: 5514887 | To: 5516939
AT5G16770.2 | From: 5514887 | To: 5516939
Sequence
AT5G16770.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G16770.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
biological_process
regulation of transcription, DNA-dependent PMID: 9839469
response to abscisic acid stimulus PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G16770.1 
length: 1284 
miRNA : ath-miR828
length: 22 
 
mfe: -22.8 kcal/mol 
p-value: 0.008062 
 
position  392 
target 5' U     C  A        A    A 
           UGGAA AC CAUUUGAG AAGA  
           ACCUU UG GUAAAUUC UUCU  
miRNA  3'       A  A        G      
 
 
target: AT5G16770.2 
length: 1538 
miRNA : ath-miR828
length: 22 
 
mfe: -22.8 kcal/mol 
p-value: 0.010332 
 
position  646 
target 5' U     C  A        A    A 
           UGGAA AC CAUUUGAG AAGA  
           ACCUU UG GUAAAUUC UUCU  
miRNA  3'       A  A        G      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_34010
AccessionTaxon
NP_174726Arabidopsis thaliana
NP_001057174Oryza sativa Japonica Group
NP_001062095Oryza sativa Japonica Group
NP_186944Arabidopsis thaliana
NP_197179Arabidopsis thaliana
NP_974792 ( AT5G16770 )Arabidopsis thaliana
30054.m000809Ricinus communis
NP_001048154Oryza sativa Japonica Group
NP_001056595Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR106418e-1603332IPR015495Myb transcription factor
PROSITEPS5129418.142961IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.601.8e-161264IPR012287Homeodomain-related
SMARTSM007171.5e-151363IPR001005SANT, DNA-binding
PfamPF002493.4e-161461IPR014778Myb, DNA-binding
SuperFamilySSF466899.3e-251483IPR009057Homeodomain-like
PROSITEPS5129427.77462116IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SMARTSM007171.3e-1666114IPR001005SANT, DNA-binding
PfamPF002492.1e-1567112IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.606.3e-1868116IPR012287Homeodomain-related
SuperFamilySSF466895.2e-1386146IPR009057Homeodomain-like