You are querying gene by "AT5G16260".

Locus: AT5G16260 Alias: ELF9

Hormone Evidence Function category Gene Description PMID
GibberellinMutant Hormone signal transduction Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay. 19376936

Basic gene information ( show / hide contents )

Locus AT5G16260 | Chromosome: 5 | Strand: +
Description Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay.
Alias
ELF9( alias )
Gene model
AT5G16260.1 | From: 5311210 | To: 5315770
Sequence
AT5G16260.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
RNA binding PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   gibberellin   ]

Genotype PMID Type
elf9-1 19376936 mutant
soc1-2 elf9-1 19376936 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

No miRNA interaction information for this gene.

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12282
AccessionTaxon
NP_001053200Oryza sativa Japonica Group
30131.m007073Ricinus communis
0200010639Ostreococcus tauri
gw1.9.278.1Physcomitrella patens subsp. patens
NP_197130 ( AT5G16260 )Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF552775.0E-62280IPR003169GYF
Gene3DG3DSA:3.30.70.3303.399999724377187E-10220363IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS501020.0276362IPR000504RNA recognition motif, RNP-1
SMARTSM003604.999998119564294E-7277359IPR000504RNA recognition motif, RNP-1
PfamPF000769.699999999999998E-4278348IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3302.299999356653938E-13405490IPR012677Nucleotide-binding, alpha-beta plait
SMARTSM003604.2000000191072615E-4407487IPR000504RNA recognition motif, RNP-1
PfamPF000761.9E-4430485IPR000504RNA recognition motif, RNP-1