You are querying gene by "AT5G13930".

Locus: AT5G13930 Alias: ATCHS

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone transportion 15100399 17557805
GeneOntology - auxin polar transport 11402184
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16021335

Basic gene information ( show / hide contents )

Locus AT5G13930 | Chromosome: 5 | Strand: +
Description
Alias
ATCHS( alias )
CHS( alias )
TT4( alias )
Gene model
AT5G13930.1 | From: 4488690 | To: 4490266
Sequence
AT5G13930.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
naringenin-chalcone synthase activity PMID: 8528278
cellular_component
plant-type vacuole membrane PMID: 11489181
nucleus PMID: 15817473
endoplasmic reticulum PMID: 15817473
biological_process
response to wounding PMID: 16021335
flavonoid biosynthetic process PMID: 8528278
response to jasmonic acid stimulus PMID: 16021335
response to UV-B PMID: 0012271060
response to gravity PMID: 16489132
response to oxidative stress PMID: 9501110
auxin polar transport PMID: 11402184
chalcone biosynthetic process PMID: 8528278
regulation of anthocyanin biosynthetic process PMID: 15993620
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Flavonoid biosynthesis chalcone synthase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
mdr4 tt4 17557805 mutant
transparent testa4(tt4) 15100399 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G13930.1 
length: 1491 
miRNA : ath-miR156h
length: 20 
 
mfe: -25.1 kcal/mol 
p-value: 0.006088 
 
position  1423 
target 5' U  A           G    U 
           GU CUCUCUUUUUU UGUC  
           CA GAGAGAAAGAA ACAG  
miRNA  3'    C           G    U 
 
 
target: AT5G13930.1 
length: 1491 
miRNA : ath-miR396a
length: 21 
 
mfe: -25.7 kcal/mol 
p-value: 0.017683 
 
position  115 
target 5' A  C            A    C 
           GG UC AGAGAGCUG UGGA  
           UC AG UCUUUCGAC ACCU  
miRNA  3' G  A  U              U 
 
 
target: AT5G13930.1 
length: 1491 
miRNA : ath-miR396b
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.015025 
 
position  114 
target 5' C   C            A    C 
           AGG UC AGAGAGCUG UGGA  
           UUC AG UCUUUCGAC ACCU  
miRNA  3'     A  U              U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_15077
AccessionTaxon
NP_191915Arabidopsis thaliana
NP_196897 ( AT5G13930 )Arabidopsis thaliana
NP_001059187Oryza sativa Japonica Group
NP_001068009Oryza sativa Japonica Group
e_gw1.61.117.1Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_38000003Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_34000025Physcomitrella patens subsp. patens
30131.m006959Ricinus communis
e_gw1.1.371.1Physcomitrella patens subsp. patens
e_gw1.292.29.1Physcomitrella patens subsp. patens
e_gw1.303.67.1Physcomitrella patens subsp. patens
e_gw1.303.70.1Physcomitrella patens subsp. patens
e_gw1.365.20.1Physcomitrella patens subsp. patens
e_gw1.39.179.1Physcomitrella patens subsp. patens
e_gw1.463.9.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_220002Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_4250003Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_5000002Physcomitrella patens subsp. patens
fgenesh1_kg.scaffold_228000002Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_20000158Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_365000013Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_426000030Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_463000007Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_463000010Physcomitrella patens subsp. patens
29904.m002980Ricinus communis
fgenesh1_pm.scaffold_25000034Physcomitrella patens subsp. patens
29648.m001959Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0004511.3e-1935395IPR011141Polyketide synthase, type III
Gene3DG3DSA:3.40.47.108.2e-926240IPR016038Thiolase-like, subgroup
PfamPF001951.6e-1268233IPR001099Chalcone/stilbene synthase, N-terminal
SuperFamilySSF539011.9e-11011390IPR016039Thiolase-like
PROSITEPS00441NA161177IPR018088Chalcone/stilbene synthase, active site
Gene3DG3DSA:3.40.47.102.3e-58242395IPR016038Thiolase-like, subgroup
PfamPF027971.4e-78244394IPR012328Chalcone/stilbene synthase, C-terminal