You are querying gene by "AT5G13930".

Locus: AT5G13930 Alias: ATCHS

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone transportion 15100399 17557805
GeneOntology - auxin polar transport 11402184
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16021335

Basic gene information ( show / hide contents )

Locus AT5G13930 | Chromosome: 5 | Strand: +
ATCHS( alias )
CHS( alias )
TT4( alias )
Gene model
AT5G13930.1 | From: 4488690 | To: 4490266
AT5G13930.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
naringenin-chalcone synthase activity PMID: 8528278
plant-type vacuole membrane PMID: 11489181
nucleus PMID: 15817473
endoplasmic reticulum PMID: 15817473
response to wounding PMID: 16021335
flavonoid biosynthetic process PMID: 8528278
response to jasmonic acid stimulus PMID: 16021335
response to UV-B PMID: 0012271060
response to gravity PMID: 16489132
response to oxidative stress PMID: 9501110
auxin polar transport PMID: 11402184
chalcone biosynthetic process PMID: 8528278
regulation of anthocyanin biosynthetic process PMID: 15993620
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Flavonoid biosynthesis chalcone synthase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
mdr4 tt4 17557805 mutant
transparent testa4(tt4) 15100399 mutant

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT5G13930.1 
length: 1491 
miRNA : ath-miR156h
length: 20 
mfe: -25.1 kcal/mol 
p-value: 0.006088 
position  1423 
target 5' U  A           G    U 
miRNA  3'    C           G    U 
target: AT5G13930.1 
length: 1491 
miRNA : ath-miR396a
length: 21 
mfe: -25.7 kcal/mol 
p-value: 0.017683 
position  115 
target 5' A  C            A    C 
miRNA  3' G  A  U              U 
target: AT5G13930.1 
length: 1491 
miRNA : ath-miR396b
length: 21 
mfe: -25.6 kcal/mol 
p-value: 0.015025 
position  114 
target 5' C   C            A    C 
miRNA  3'     A  U              U 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_15077
NP_191915Arabidopsis thaliana
NP_196897 ( AT5G13930 )Arabidopsis thaliana
NP_001059187Oryza sativa Japonica Group
NP_001068009Oryza sativa Japonica Group
e_gw1.61.117.1Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_38000003Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_34000025Physcomitrella patens subsp. patens
30131.m006959Ricinus communis
e_gw1.1.371.1Physcomitrella patens subsp. patens
e_gw1.292.29.1Physcomitrella patens subsp. patens
e_gw1.303.67.1Physcomitrella patens subsp. patens
e_gw1.303.70.1Physcomitrella patens subsp. patens
e_gw1.365.20.1Physcomitrella patens subsp. patens
e_gw1.39.179.1Physcomitrella patens subsp. patens
e_gw1.463.9.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_220002Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_4250003Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_5000002Physcomitrella patens subsp. patens
fgenesh1_kg.scaffold_228000002Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_20000158Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_365000013Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_426000030Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_463000007Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_463000010Physcomitrella patens subsp. patens
29904.m002980Ricinus communis
fgenesh1_pm.scaffold_25000034Physcomitrella patens subsp. patens
29648.m001959Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0004511.3e-1935395IPR011141Polyketide synthase, type III
Gene3DG3DSA:, subgroup
PfamPF001951.6e-1268233IPR001099Chalcone/stilbene synthase, N-terminal
PROSITEPS00441NA161177IPR018088Chalcone/stilbene synthase, active site
Gene3DG3DSA:, subgroup
PfamPF027971.4e-78244394IPR012328Chalcone/stilbene synthase, C-terminal