You are querying gene by "AT5G13680".

Locus: AT5G13680 Alias: ABO1

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction encodes a homolog of saccharomyces cerevisiae Iki3/Elp1/Tot1 and homan I 16943431

Basic gene information ( show / hide contents )

Locus AT5G13680 | Chromosome: 5 | Strand: -
Description encodes a homolog of saccharomyces cerevisiae Iki3/Elp1/Tot1 and homan I
Alias
ABO1( alias )
ELO2( alias )
Gene model
AT5G13680.1 | From: 4410364 | To: 4415474
Sequence
AT5G13680.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription elongation regulator activity PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
organ growth PMID: 15894610
cell proliferation PMID: 15894610
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
abo1-1 16943431 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G13680.1 
length: 4121 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -23.8 kcal/mol 
p-value: 0.059675 
 
position  3638 
target 5' C                A    A 
           UG GC AGUGCGGGUG GGAG  
           AC CG UUACGCCUAU UUUC  
miRNA  3'    G  U          A      
 
 
target: AT5G13680.1 
length: 4121 
miRNA : ath-miR417
length: 21 
 
mfe: -22.5 kcal/mol 
p-value: 0.072698 
 
position  3857 
target 5' A    G              G 
           UGAA AAGUUUAUUGCUUU  
           GCUU UUUAAGUGAUGGAA  
miRNA  3' A    G              G 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G13680AT1G20440negativeotherN/Amutance16943431
AT5G13680AT1G45249negativeotherN/Amutance16943431
AT5G13680AT5G25610negativeotherN/Amutance16943431
AT5G13680AT5G52300negativeotherN/Amutance16943431
AT5G13680AT5G52310negativeotherN/Amutance16943431

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12775
AccessionTaxon
NP_196872 ( AT5G13680 )Arabidopsis thaliana
NP_001059998Oryza sativa Japonica Group
1700010176Ostreococcus tauri
estExt_Genewise1.C_350230Physcomitrella patens subsp. patens
29585.m000594Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0172330.011319IPR006849IKI3
PfamPF047623.000000000000004E-211156IPR006849IKI3
PANTHERPTHR127470.021317IPR006849IKI3
SuperFamilySSF509781.9E-82348IPR011046WD40 repeat-like-containing domain
PfamPF047620.0166953IPR006849IKI3