You are querying gene by "AT5G13300".

Locus: AT5G13300 Alias: AGD3

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 10887077

Basic gene information ( show / hide contents )

Locus AT5G13300 | Chromosome: 5 | Strand: -
Description response to auxin stimulus
AGD3( alias )
SFC( alias )
VAN3( alias )
Gene model
AT5G13300.1 | From: 4255604 | To: 4262317
AT5G13300.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
ARF GTPase activator activity PMID: 15743878
phosphoinositide binding PMID: 15743878
trans-Golgi network transport vesicle PMID: 15743878
xylem and phloem pattern formation PMID: 15923323
response to auxin stimulus PMID: 10887077
leaf morphogenesis PMID: 10887077
phloem or xylem histogenesis PMID: 10887076
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT5G13300.1 
length: 3102 
miRNA : ath-miR2112-3p
length: 21 
mfe: -23.7 kcal/mol 
p-value: 0.047991 
position  2305 
target 5' A                    U 
miRNA  3'    G  U              C 
target: AT5G13300.1 
length: 3102 
miRNA : ath-miR413
length: 21 
mfe: -23.4 kcal/mol 
p-value: 0.116335 
position  261 
target 5' U    C   G        G  A 
miRNA  3'      U   G        G  A 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11348
NP_172556Arabidopsis thaliana
NP_176283Arabidopsis thaliana
NP_196834 ( AT5G13300 )Arabidopsis thaliana
NP_001047503Oryza sativa Japonica Group
NP_001062366Oryza sativa Japonica Group
NP_001063635Oryza sativa Japonica Group
fgenesh1_pg.scaffold_177000023Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_249000035Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_36000007Physcomitrella patens subsp. patens
29801.m003240Ricinus communis
30128.m008549Ricinus communis
30147.m014416Ricinus communis
NP_201004Arabidopsis thaliana
195506Chlamydomonas reinhardtii
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS500030.0292430IPR001849Pleckstrin homology
Gene3DG3DSA: homology-type
SMARTSM002331.29999924468179E-20293432IPR001849Pleckstrin homology
PfamPF001692.2000000000000037E-11294427IPR001849Pleckstrin homology
SuperFamilySSF578639.00000407957216E-39499640IPR001164Arf GTPase activating protein
SMARTSM001052.3000044072653397E-44501643IPR001164Arf GTPase activating protein
PROSITEPS501150.0501643IPR001164Arf GTPase activating protein
PfamPF014121.4E-31503638IPR001164Arf GTPase activating protein
PRINTSPR004058.800002658362784E-16513532IPR001164Arf GTPase activating protein
PRINTSPR004058.800002658362784E-16532549IPR001164Arf GTPase activating protein
PRINTSPR004058.800002658362784E-16555576IPR001164Arf GTPase activating protein
Gene3DG3DSA: repeat-containing domain
SMARTSM002481.699999222840496E-5728757IPR002110Ankyrin repeat
PROSITEPS500880.0728760IPR002110Ankyrin repeat
PROSITEPS502970.0728816IPR020683Ankyrin repeat-containing domain
PfamPF000237.4E-4729759IPR002110Ankyrin repeat
SuperFamilySSF484033.199998990463549E-26729818IPR020683Ankyrin repeat-containing domain
SMARTSM002481.9999996542163217E-4761790IPR002110Ankyrin repeat
PROSITEPS500880.0761793IPR002110Ankyrin repeat
PfamPF000230.0019000000000000002762792IPR002110Ankyrin repeat
SMARTSM00248220.00002175608174794826IPR002110Ankyrin repeat