You are querying gene by "AT5G13300".

Locus: AT5G13300 Alias: AGD3

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 10887077

Basic gene information ( show / hide contents )

Locus AT5G13300 | Chromosome: 5 | Strand: -
Description response to auxin stimulus
Alias
AGD3( alias )
SFC( alias )
VAN3( alias )
Gene model
AT5G13300.1 | From: 4255604 | To: 4262317
Sequence
AT5G13300.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
ARF GTPase activator activity PMID: 15743878
phosphoinositide binding PMID: 15743878
cellular_component
trans-Golgi network transport vesicle PMID: 15743878
biological_process
xylem and phloem pattern formation PMID: 15923323
response to auxin stimulus PMID: 10887077
leaf morphogenesis PMID: 10887077
phloem or xylem histogenesis PMID: 10887076
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G13300.1 
length: 3102 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.047991 
 
position  2305 
target 5' A                    U 
           UG GU GAUGCGGAUGUGAA  
           AC CG UUACGCCUAUAUUU  
miRNA  3'    G  U              C 
 
 
target: AT5G13300.1 
length: 3102 
miRNA : ath-miR413
length: 21 
 
mfe: -23.4 kcal/mol 
p-value: 0.116335 
 
position  261 
target 5' U    C   G        G  A 
           GUGU GAA AAGAGGAA UA  
           CACG CUU UUCUCUUU AU  
miRNA  3'      U   G        G  A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11348
AccessionTaxon
NP_172556Arabidopsis thaliana
NP_176283Arabidopsis thaliana
NP_196834 ( AT5G13300 )Arabidopsis thaliana
NP_001047503Oryza sativa Japonica Group
NP_001062366Oryza sativa Japonica Group
NP_001063635Oryza sativa Japonica Group
fgenesh1_pg.scaffold_177000023Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_249000035Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_36000007Physcomitrella patens subsp. patens
29801.m003240Ricinus communis
30128.m008549Ricinus communis
30147.m014416Ricinus communis
NP_201004Arabidopsis thaliana
195506Chlamydomonas reinhardtii
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF031141.6000000000000007E-1015216IPR004148BAR
PROSITEPS500030.0292430IPR001849Pleckstrin homology
Gene3DG3DSA:2.30.29.303.899998617952183E-13293444IPR011993Pleckstrin homology-type
SMARTSM002331.29999924468179E-20293432IPR001849Pleckstrin homology
PfamPF001692.2000000000000037E-11294427IPR001849Pleckstrin homology
SuperFamilySSF578639.00000407957216E-39499640IPR001164Arf GTPase activating protein
SMARTSM001052.3000044072653397E-44501643IPR001164Arf GTPase activating protein
PROSITEPS501150.0501643IPR001164Arf GTPase activating protein
PfamPF014121.4E-31503638IPR001164Arf GTPase activating protein
PRINTSPR004058.800002658362784E-16513532IPR001164Arf GTPase activating protein
PRINTSPR004058.800002658362784E-16532549IPR001164Arf GTPase activating protein
PRINTSPR004058.800002658362784E-16555576IPR001164Arf GTPase activating protein
Gene3DG3DSA:1.25.40.202.3999979815724067E-23652809IPR020683Ankyrin repeat-containing domain
SMARTSM002481.699999222840496E-5728757IPR002110Ankyrin repeat
PROSITEPS500880.0728760IPR002110Ankyrin repeat
PROSITEPS502970.0728816IPR020683Ankyrin repeat-containing domain
PfamPF000237.4E-4729759IPR002110Ankyrin repeat
SuperFamilySSF484033.199998990463549E-26729818IPR020683Ankyrin repeat-containing domain
SMARTSM002481.9999996542163217E-4761790IPR002110Ankyrin repeat
PROSITEPS500880.0761793IPR002110Ankyrin repeat
PfamPF000230.0019000000000000002762792IPR002110Ankyrin repeat
SMARTSM00248220.00002175608174794826IPR002110Ankyrin repeat