You are querying gene by "AT5G13220".

Locus: AT5G13220 Alias: AT5G13220

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - response to jasmonic acid stimulus 17637677

Basic gene information ( show / hide contents )

Locus AT5G13220 | Chromosome: 5 | Strand: +
Description response to jasmonic acid stimulus
Alias
AT5G13220( alias )
JAS1( alias )
JAZ10( alias )
TIFY 9( alias )
TIFY9( alias )
Gene model
AT5G13220.2 | From: 4218891 | To: 4220703
AT5G13220.1 | From: 4218891 | To: 4220817
AT5G13220.3 | From: 4218891 | To: 4220770
Sequence
AT5G13220.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G13220.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G13220.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
response to jasmonic acid stimulus PMID: 17637677
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G13220.1 
length: 1019 
miRNA : ath-miR841
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.003833 
 
position  451 
target 5' U        U C     U      A 
           UUCAGUUU C AAGUG CUCGUA  
           AAGUCAAA G UUCAC GAGCAU  
miRNA  3'                  C        
 
 
target: AT5G13220.2 
length: 1375 
miRNA : ath-miR841
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.005720 
 
position  451 
target 5' U        U C     U      A 
           UUCAGUUU C AAGUG CUCGUA  
           AAGUCAAA G UUCAC GAGCAU  
miRNA  3'                  C        
 
 
target: AT5G13220.3 
length: 1025 
miRNA : ath-miR841
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.003864 
 
position  451 
target 5' U        U C     U      A 
           UUCAGUUU C AAGUG CUCGUA  
           AAGUCAAA G UUCAC GAGCAU  
miRNA  3'                  C        
 
 
target: AT5G13220.4 
length: 1033 
miRNA : ath-miR841
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.003905 
 
position  451 
target 5' U        U C     U      A 
           UUCAGUUU C AAGUG CUCGUA  
           AAGUCAAA G UUCAC GAGCAU  
miRNA  3'                  C        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_45155
AccessionTaxon
NP_001154713Arabidopsis thaliana
NP_568287 ( AT5G13220 )Arabidopsis thaliana
NP_974775Arabidopsis thaliana
NP_974776Arabidopsis thaliana
NP_001052661Oryza sativa Japonica Group
30128.m009047Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS5132012.13898132IPR010399Tify
PROSITEPS513200.098132IPR010399Tify
PROSITEPS513200.098132IPR010399Tify
PfamPF062003.6e-12101131IPR010399Tify
PfamPF062002.200000000000004E-9101131IPR010399Tify
PfamPF062002.6E-9101131IPR010399Tify
PfamPF094258.2e-15168193IPR018467CCT domain-like
PfamPF094254.1E-6168185IPR018467CCT domain-like