You are querying gene by "AT5G12210".

Locus: AT5G12210 Alias: AtRGTB1

Hormone Evidence Function category Gene Description PMID
BrassinosteroidMutant Hormone signal transduction geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative (TAIR:AT3G12070.2); Has 1176 Blast hits to 1014 proteins in 185 species: Archae - 0; Bacteria - 22; Metazoa - 490; Fungi - 275; Plants - 123; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink). 20180921

Basic gene information ( show / hide contents )

Locus AT5G12210 | Chromosome: 5 | Strand: +
Description geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative (TAIR:AT3G12070.2); Has 1176 Blast hits to 1014 proteins in 185 species: Archae - 0; Bacteria - 22; Metazoa - 490; Fungi - 275; Plants - 123; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).
Alias
AtRGTB1( alias )
Gene model
AT5G12210.1 | From: 3947104 | To: 3949867
AT5G12210.2 | From: 3947104 | To: 3949867
Sequence
AT5G12210.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G12210.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
catalytic activity PMID:
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Other enzymes
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   Brassinosteroid   ]

Genotype PMID Type
rgtb1-1 20180921 mutant
rgtb1-2 20180921 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G12210.1 
length: 1388 
miRNA : ath-miR2938
length: 21 
 
mfe: -31.9 kcal/mol 
p-value: 0.002845 
 
position  522 
target 5' A    U              A 
           UGGA CCUUCUCAGGAGAU  
           ACCU GGGAGAGUUUUCUA  
miRNA  3' G    U              G 
 
 
target: AT5G12210.2 
length: 1385 
miRNA : ath-miR2938
length: 21 
 
mfe: -31.9 kcal/mol 
p-value: 0.002838 
 
position  519 
target 5' A    U              A 
           UGGA CCUUCUCAGGAGAU  
           ACCU GGGAGAGUUUUCUA  
miRNA  3' G    U              G 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11238
AccessionTaxon
NP_187814Arabidopsis thaliana
NP_568259 ( AT5G12210 )Arabidopsis thaliana
NP_850567Arabidopsis thaliana
NP_974770Arabidopsis thaliana
190175Chlamydomonas reinhardtii
NP_001062217Oryza sativa Japonica Group
fgenesh1_pm.C_Chr_11.0001000002Ostreococcus tauri
estExt_gwp_gw1.C_1630061Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_340340Physcomitrella patens subsp. patens
29701.m000593Ricinus communis
28098.m000129Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF482391.2E-11510316IPR008930Terpenoid cylases/protein prenyltransferase alpha-alpha toroid
SuperFamilySSF482392.8E-11510317IPR008930Terpenoid cylases/protein prenyltransferase alpha-alpha toroid
PfamPF004322.7999999999999986E-861100IPR001330Prenyltransferase/squalene oxidase
PfamPF004322.7999999999999986E-862101IPR001330Prenyltransferase/squalene oxidase
PfamPF004323.500000000000003E-8108149IPR001330Prenyltransferase/squalene oxidase
PfamPF004323.500000000000003E-8109150IPR001330Prenyltransferase/squalene oxidase
PfamPF004329.500000000000004E-12155198IPR001330Prenyltransferase/squalene oxidase
PfamPF004329.600000000000012E-12156199IPR001330Prenyltransferase/squalene oxidase
PfamPF004321.3000000000000007E-8204246IPR001330Prenyltransferase/squalene oxidase
PfamPF004321.3000000000000007E-8205247IPR001330Prenyltransferase/squalene oxidase
PfamPF004328.400000000000007E-9251294IPR001330Prenyltransferase/squalene oxidase
PfamPF004328.400000000000007E-9252295IPR001330Prenyltransferase/squalene oxidase