You are querying gene by "AT5G11320".

Locus: AT5G11320 Alias: YUC4

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone biosynthesis YUCCA flavin monooxygenases 16818609 17704214 18000043
GeneOntology - auxin biosynthetic process 16818609

Basic gene information ( show / hide contents )

Locus AT5G11320 | Chromosome: 5 | Strand: -
Description YUCCA flavin monooxygenases
Alias
YUC4( alias )
Gene model
AT5G11320.2 | From: 3611991 | To: 3613362
AT5G11320.1 | From: 3611248 | To: 3613362
Sequence
AT5G11320.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G11320.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
monooxygenase activity PMID:
biological_process
phyllome development PMID: 18000043
anatomical structure morphogenesis PMID: 17704214
inflorescence development PMID: 18000043
cotyledon development PMID: 18000043
auxin biosynthetic process PMID: 16818609
positive regulation of flower development PMID: 18000043
leaf development PMID: 17704214
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
yuc1 yuc yuc4 yuc6 16818609 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G11320.1 
length: 1418 
miRNA : ath-miR842
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.006121 
 
position  348 
target 5' C       C      U      A 
           GAUGACG AUCUGG CUAUGG  
           CUACUGC UAGACU GGUACU  
miRNA  3' C       C               
 
 
target: AT5G11320.2 
length: 1141 
miRNA : ath-miR842
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.004753 
 
position  348 
target 5' C       C      U      A 
           GAUGACG AUCUGG CUAUGG  
           CUACUGC UAGACU GGUACU  
miRNA  3' C       C               
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12899
AccessionTaxon
NP_171955Arabidopsis thaliana
NP_180881Arabidopsis thaliana
NP_194980Arabidopsis thaliana
e_gw1.139.33.1Physcomitrella patens subsp. patens
e_gw1.204.26.1Physcomitrella patens subsp. patens
e_gw1.37.68.1Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_11000006Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_22000038Physcomitrella patens subsp. patens
29904.m003041Ricinus communis
30204.m001831Ricinus communis
NP_196693 ( AT5G11320 )Arabidopsis thaliana
NP_850808Arabidopsis thaliana
NP_001043702Oryza sativa Japonica Group
NP_175321Arabidopsis thaliana
NP_171914Arabidopsis thaliana
NP_194601Arabidopsis thaliana
NP_199202Arabidopsis thaliana
NP_001052088Oryza sativa Japonica Group
30093.m000370Ricinus communis
29848.m004706Ricinus communis
NP_001049048Oryza sativa Japonica Group
NP_001042455Oryza sativa Japonica Group
NP_001059508Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PRINTSPR003681.9000006847787025E-81638IPR013027FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PRINTSPR004696.899999633797004E-111638IPR000103Pyridine nucleotide-disulphide oxidoreductase, class-II
PRINTSPR003682.6999988713205973E-81638IPR013027FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PRINTSPR004699.800002721302184E-111638IPR000103Pyridine nucleotide-disulphide oxidoreductase, class-II
PfamPF007434.5000000000000034E-2419331IPR020946Flavin-containing monooxygenase-like
PfamPF007438.200000000000062E-2419329IPR020946Flavin-containing monooxygenase-like
PRINTSPR004696.899999633797004E-11135143IPR000103Pyridine nucleotide-disulphide oxidoreductase, class-II
PRINTSPR004699.800002721302184E-11135143IPR000103Pyridine nucleotide-disulphide oxidoreductase, class-II
PRINTSPR003681.9000006847787025E-8137146IPR013027FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PRINTSPR003682.6999988713205973E-8137146IPR013027FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PRINTSPR004696.899999633797004E-11174198IPR000103Pyridine nucleotide-disulphide oxidoreductase, class-II
PRINTSPR004699.800002721302184E-11174198IPR000103Pyridine nucleotide-disulphide oxidoreductase, class-II
PRINTSPR003681.9000006847787025E-8178203IPR013027FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PRINTSPR003682.6999988713205973E-8178203IPR013027FAD-dependent pyridine nucleotide-disulphide oxidoreductase