You are querying gene by "AT5G11270".

Locus: AT5G11270 Alias: OCP3

Hormone Evidence Function category Gene Description PMID
jasmonic acidMutant Hormone signal transduction Encodes a homeodomain transcription factor involved in mediating resistance to infection by necrotrophic pathogens dependent on perception of jasmonic acid through COI1. Expressed in the nucleus. Downregulated upon fungal infection. 15923348
GeneOntology - jasmonic acid mediated signaling pathway 15923348

Basic gene information ( show / hide contents )

Locus AT5G11270 | Chromosome: 5 | Strand: -
Description Encodes a homeodomain transcription factor involved in mediating resistance to infection by necrotrophic pathogens dependent on perception of jasmonic acid through COI1. Expressed in the nucleus. Downregulated upon fungal infection.
Alias
OCP3( alias )
Gene model
AT5G11270.1 | From: 3595286 | To: 3597099
Sequence
AT5G11270.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 15923348
cellular_component
nucleus PMID: 15923348
biological_process
jasmonic acid mediated signaling pathway PMID: 15923348
defense response PMID: 15923348
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
ocp3 15923348 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G11270.1 
length: 1359 
miRNA : ath-miR414
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.001422 
 
position  507 
target 5' A       A       U     U 
           UGAUGAU AUGAUGA GAUGA  
           ACUGCUA UACUACU CUACU  
miRNA  3'         C       U       
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G11270AT1G02930negativetransciptN/AGO/others15923348

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_45437
AccessionTaxon
NP_196688 ( AT5G11270 )Arabidopsis thaliana
NP_001058002Oryza sativa Japonica Group
0500010395Ostreococcus tauri
estExt_fgenesh1_pg.C_200064Physcomitrella patens subsp. patens
29848.m004652Ricinus communis
193564Chlamydomonas reinhardtii
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.10.603.0000006799286852E-5284338IPR012287Homeodomain-related
PROSITEPS500710.0284344IPR001356Homeobox
SuperFamilySSF466896.5E-8285353IPR009057Homeodomain-like
SMARTSM003895.59999989417023E-4290348IPR001356Homeobox
PfamPF000460.0028999999999999994292339IPR001356Homeobox