You are querying gene by "AT5G08130".

Locus: AT5G08130 Alias: BIM1

Hormone Evidence Function category Gene Description PMID
brassinosteroidTransgenic Hormone signal transduction BES1-interacting Myc-like 1 15680330
Mutant Hormone signal transduction BES1-interacting Myc-like 1 15680330
GeneOntology - brassinosteroid mediated signaling 15680330

Basic gene information ( show / hide contents )

Locus AT5G08130 | Chromosome: 5 | Strand: -
Description BES1-interacting Myc-like 1
Alias
BIM1( alias )
Gene model
AT5G08130.1 | From: 2606201 | To: 2609607
Sequence
AT5G08130.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
protein binding PMID: 15680330
transcription factor activity PMID: 15680330
cellular_component
nucleus PMID:
biological_process
brassinosteroid mediated signaling PMID: 15680330
regulation of transcription PMID: 11118137
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  Brassinosteroid     brassinosteroid  

[   Brassinosteroid   ]

Genotype PMID Type
BIM1 ox 15680330 transgenic
bim1 15680330 mutant
bim1/2/3 triple mutant 15680330 mutant
bim drn-1 drn1 phv 18830673 mutant

[   brassinosteroid   ]

Genotype PMID Type
BIM1 ox 15680330 transgenic
bim1 15680330 mutant
bim1/2/3 triple mutant 15680330 mutant
bim drn-1 drn1 phv 18830673 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G08130.1 
length: 2043 
miRNA : ath-miR159a
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.066264 
 
position  1081 
target 5' A      G      C      A 
           GGAGUU CUUUUG UCCAAA  
           UCUCGA GGAAGU AGGUUU  
miRNA  3' A      G      U        
 
 
target: AT5G08130.1 
length: 2043 
miRNA : ath-miR159b
length: 21 
 
mfe: -24.9 kcal/mol 
p-value: 0.066808 
 
position  1080 
target 5' A       G      C      A 
           AGGAGUU CUUUUG UCCAAA  
           UUCUCGA GGAAGU AGGUUU  
miRNA  3'         G      U        
 
 
target: AT5G08130.1 
length: 2043 
miRNA : ath-miR159c
length: 21 
 
mfe: -27.6 kcal/mol 
p-value: 0.023909 
 
position  1080 
target 5' A       G      C      A 
           AGGAGUU CUUUUG UCCAAA  
           UCCUCGA GGAAGU AGGUUU  
miRNA  3'         G      U        
 
 
target: AT5G08130.1 
length: 2043 
miRNA : ath-miR319c
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.025401 
 
position  1079 
target 5' G        G      C     A 
           AAGGAGUU CUUUUG UCCAA  
           UUCCUCGA GGAAGU AGGUU  
miRNA  3'          G      C       
 
 
target: AT5G08130.2 
length: 2597 
miRNA : ath-miR159a
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.083515 
 
position  1635 
target 5' A      G      C      A 
           GGAGUU CUUUUG UCCAAA  
           UCUCGA GGAAGU AGGUUU  
miRNA  3' A      G      U        
 
 
target: AT5G08130.2 
length: 2597 
miRNA : ath-miR159b
length: 21 
 
mfe: -24.9 kcal/mol 
p-value: 0.084213 
 
position  1634 
target 5' A       G      C      A 
           AGGAGUU CUUUUG UCCAAA  
           UUCUCGA GGAAGU AGGUUU  
miRNA  3'         G      U        
 
 
target: AT5G08130.2 
length: 2597 
miRNA : ath-miR159c
length: 21 
 
mfe: -27.6 kcal/mol 
p-value: 0.030686 
 
position  1634 
target 5' A       G      C      A 
           AGGAGUU CUUUUG UCCAAA  
           UCCUCGA GGAAGU AGGUUU  
miRNA  3'         G      U        
 
 
target: AT5G08130.2 
length: 2597 
miRNA : ath-miR1888
length: 21 
 
mfe: -19.6 kcal/mol 
p-value: 0.125689 
 
position  63 
target 5' G       G             G 
           UUCUUUA AGAUUU GACUUG  
           AAGAAGU UUUAGA UUGAAU  
miRNA  3'         G      A        
 
 
target: AT5G08130.2 
length: 2597 
miRNA : ath-miR319c
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.033150 
 
position  1633 
target 5' G        G      C     A 
           AAGGAGUU CUUUUG UCCAA  
           UUCCUCGA GGAAGU AGGUU  
miRNA  3'          G      C       
 
 
target: AT5G08130.3 
length: 2040 
miRNA : ath-miR159a
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.066167 
 
position  1078 
target 5' A      G      C      A 
           GGAGUU CUUUUG UCCAAA  
           UCUCGA GGAAGU AGGUUU  
miRNA  3' A      G      U        
 
 
target: AT5G08130.3 
length: 2040 
miRNA : ath-miR159b
length: 21 
 
mfe: -24.9 kcal/mol 
p-value: 0.066711 
 
position  1077 
target 5' A       G      C      A 
           AGGAGUU CUUUUG UCCAAA  
           UUCUCGA GGAAGU AGGUUU  
miRNA  3'         G      U        
 
 
target: AT5G08130.3 
length: 2040 
miRNA : ath-miR159c
length: 21 
 
mfe: -27.6 kcal/mol 
p-value: 0.023872 
 
position  1077 
target 5' A       G      C      A 
           AGGAGUU CUUUUG UCCAAA  
           UCCUCGA GGAAGU AGGUUU  
miRNA  3'         G      U        
 
 
target: AT5G08130.3 
length: 2040 
miRNA : ath-miR319c
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.025359 
 
position  1076 
target 5' G        G      C     A 
           AAGGAGUU CUUUUG UCCAA  
           UUCCUCGA GGAAGU AGGUU  
miRNA  3'          G      C       
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G08130AT1G12980nondirectionprotein interactionN/Amutance18830673
AT5G08130AT1G24590nondirectionprotein interactionN/Amutance18830673

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_25254
AccessionTaxon
NP_001119190Arabidopsis thaliana
NP_001154698Arabidopsis thaliana
NP_196430 ( AT5G08130 )Arabidopsis thaliana
estExt_fgenesh1_pg.C_2110039Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_37000071Physcomitrella patens subsp. patens
NP_001063459Oryza sativa Japonica Group
gw1.90.123.1Physcomitrella patens subsp. patens
NP_001062109Oryza sativa Japonica Group
30138.m003913Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:4.10.280.101.8e-14152233IPR011598Helix-loop-helix DNA-binding
SuperFamilySSF474595.6e-17152231IPR011598Helix-loop-helix DNA-binding
Gene3DG3DSA:4.10.280.101.9e-14152233IPR011598Helix-loop-helix DNA-binding
SuperFamilySSF474594.5e-17154239IPR011598Helix-loop-helix DNA-binding
PROSITEPS5088814.020157207IPR001092Helix-loop-helix DNA-binding domain
PROSITEPS5088814.020157207IPR001092Helix-loop-helix DNA-binding domain
PfamPF000101.4e-15158207IPR001092Helix-loop-helix DNA-binding domain
PfamPF000101.4e-15158207IPR001092Helix-loop-helix DNA-binding domain
SMARTSM003533.4e-13162212IPR001092Helix-loop-helix DNA-binding domain
SMARTSM003533.4e-13162212IPR001092Helix-loop-helix DNA-binding domain
Gene3DG3DSA:4.10.280.101.8e-14272353IPR011598Helix-loop-helix DNA-binding
SuperFamilySSF474595.6e-17272351IPR011598Helix-loop-helix DNA-binding
PROSITEPS5088814.020277327IPR001092Helix-loop-helix DNA-binding domain
PfamPF000101.9e-15278327IPR001092Helix-loop-helix DNA-binding domain
SMARTSM003533.4e-13282332IPR001092Helix-loop-helix DNA-binding domain