You are querying gene by "AT5G07580".

Locus: AT5G07580 Alias: AT5G07580

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - ethylene mediated signaling pathway 9687012

Basic gene information ( show / hide contents )

Locus AT5G07580 | Chromosome: 5 | Strand: +
Description ethylene mediated signaling pathway
Alias
AT5G07580( alias )
Gene model
AT5G07580.1 | From: 2399505 | To: 2400602
Sequence
AT5G07580.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
ethylene mediated signaling pathway PMID: 9687012
regulation of transcription, DNA-dependent PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G07580.1 
length: 1098 
miRNA : ath-miR156h
length: 20 
 
mfe: -26.3 kcal/mol 
p-value: 0.002413 
 
position  953 
target 5' A      G       A    C 
           UGUUCU UUUCUUC UGUC  
           ACGAGA AAAGAAG ACAG  
miRNA  3' C      G            U 
 
 
target: AT5G07580.1 
length: 1098 
miRNA : ath-miR781
length: 21 
 
mfe: -21.1 kcal/mol 
p-value: 0.118008 
 
position  227 
target 5' C    U  G     A       U 
           GAGU UU AGGAA GCUCUGA  
           UUCA AG UCUUU UGAGAUU  
miRNA  3' A    U  G               
 
 
target: AT5G07580.1 
length: 1098 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -22.2 kcal/mol 
p-value: 0.050370 
 
position  611 
target 5' A    G  U      U    C 
           GAAA GA CAAGAA CUGG  
           CUUU CU GUUCUU GACU  
miRNA  3' A    G  U      U    A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_70460
AccessionTaxon
NP_196375 ( AT5G07580 )Arabidopsis thaliana
NP_200967Arabidopsis thaliana
30147.m014329Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.730.105.1e-24175237IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
SuperFamilySSF541716.1e-24175237IPR016177DNA-binding, integrase-type
PfamPF008474.3e-14176226IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
SMARTSM003808.3e-36176240IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PROSITEPS5103224.487176234IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003675.9e-13177188IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003675.9e-13216236IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding