You are querying gene by "AT5G06100".

Locus: AT5G06100 Alias: ATMYB33

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - positive regulation of abscisic acid mediated signaling 17217461
gibberellinGeneOntology - gibberellic acid mediated signaling 11743113

Basic gene information ( show / hide contents )

Locus AT5G06100 | Chromosome: 5 | Strand: +
Description gibberellic acid mediated signaling
Alias
ATMYB33( alias )
MYB33( alias )
Gene model
AT5G06100.1 | From: 1837915 | To: 1839998
AT5G06100.2 | From: 1837915 | To: 1840728
AT5G06100.3 | From: 1837908 | To: 1840418
Sequence
AT5G06100.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G06100.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G06100.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11743113
cellular_component
nucleus PMID: 11743113
biological_process
positive regulation of abscisic acid mediated signaling PMID: 17217461
regulation of transcription, DNA-dependent PMID:
pollen sperm cell differentiation PMID: 15722475
gibberellic acid mediated signaling PMID: 11743113
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G06100.1 
length: 1579 
miRNA : ath-miR159a
length: 21 
 
mfe: -37.7 kcal/mol 
p-value: 0.000176 
 
position  1160 
target 5' C              U     U 
           UGGAGCUCCCUUCA UCCAA  
           AUCUCGAGGGAAGU AGGUU  
miRNA  3'                U     U 
 
 
target: AT5G06100.1 
length: 1579 
miRNA : ath-miR159b
length: 21 
 
mfe: -36.9 kcal/mol 
p-value: 0.000237 
 
position  1161 
target 5' U             U     U 
           GGAGCUCCCUUCA UCCAA  
           UCUCGAGGGAAGU AGGUU  
miRNA  3' U             U     U 
 
 
target: AT5G06100.1 
length: 1579 
miRNA : ath-miR159c
length: 21 
 
mfe: -39.0 kcal/mol 
p-value: 0.000140 
 
position  1161 
target 5' U             U     U 
           GGAGCUCCCUUCA UCCAA  
           CCUCGAGGGAAGU AGGUU  
miRNA  3' U             U     U 
 
 
target: AT5G06100.2 
length: 2127 
miRNA : ath-miR159a
length: 21 
 
mfe: -37.7 kcal/mol 
p-value: 0.000282 
 
position  1160 
target 5' C              U     U 
           UGGAGCUCCCUUCA UCCAA  
           AUCUCGAGGGAAGU AGGUU  
miRNA  3'                U     U 
 
 
target: AT5G06100.2 
length: 2127 
miRNA : ath-miR159b
length: 21 
 
mfe: -36.9 kcal/mol 
p-value: 0.000376 
 
position  1161 
target 5' U             U     U 
           GGAGCUCCCUUCA UCCAA  
           UCUCGAGGGAAGU AGGUU  
miRNA  3' U             U     U 
 
 
target: AT5G06100.2 
length: 2127 
miRNA : ath-miR159c
length: 21 
 
mfe: -39.0 kcal/mol 
p-value: 0.000222 
 
position  1161 
target 5' U             U     U 
           GGAGCUCCCUUCA UCCAA  
           CCUCGAGGGAAGU AGGUU  
miRNA  3' U             U     U 
 
 
target: AT5G06100.3 
length: 1905 
miRNA : ath-miR159a
length: 21 
 
mfe: -37.7 kcal/mol 
p-value: 0.000238 
 
position  1248 
target 5' C              U     U 
           UGGAGCUCCCUUCA UCCAA  
           AUCUCGAGGGAAGU AGGUU  
miRNA  3'                U     U 
 
 
target: AT5G06100.3 
length: 1905 
miRNA : ath-miR159b
length: 21 
 
mfe: -36.9 kcal/mol 
p-value: 0.000318 
 
position  1249 
target 5' U             U     U 
           GGAGCUCCCUUCA UCCAA  
           UCUCGAGGGAAGU AGGUU  
miRNA  3' U             U     U 
 
 
target: AT5G06100.3 
length: 1905 
miRNA : ath-miR159c
length: 21 
 
mfe: -39.0 kcal/mol 
p-value: 0.000188 
 
position  1249 
target 5' U             U     U 
           GGAGCUCCCUUCA UCCAA  
           CCUCGAGGGAAGU AGGUU  
miRNA  3' U             U     U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_37231
AccessionTaxon
NP_001078537Arabidopsis thaliana
NP_187751Arabidopsis thaliana
NP_196228 ( AT5G06100 )Arabidopsis thaliana
NP_850779Arabidopsis thaliana
NP_001044592Oryza sativa Japonica Group
gw1.238.44.1Physcomitrella patens subsp. patens
gw1.66.160.1Physcomitrella patens subsp. patens
29686.m000890Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0016930.01520IPR016310Transcription factor, GAMYB
PANTHERPTHR106413.1000130737047416E-11428313IPR015495Myb transcription factor
PANTHERPTHR106413.1000130737047416E-11428313IPR015495Myb transcription factor
PROSITEPS512940.02981IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PROSITEPS512940.02981IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.601.5999988934924722E-153284IPR012287Homeodomain-related
Gene3DG3DSA:1.10.10.601.5999988934924722E-153284IPR012287Homeodomain-related
SMARTSM007172.8999971786218444E-143383IPR001005SANT, DNA-binding
SMARTSM007172.8999971786218444E-143383IPR001005SANT, DNA-binding
PfamPF002491.3000000000000007E-103481IPR014778Myb, DNA-binding
SuperFamilySSF466892.9E-2134104IPR009057Homeodomain-like
PfamPF002491.6000000000000007E-103481IPR014778Myb, DNA-binding
SuperFamilySSF466892.9E-2134104IPR009057Homeodomain-like
PROSITEPS512940.082136IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PROSITEPS512940.082136IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SMARTSM007171.5000030697110436E-1786134IPR001005SANT, DNA-binding
SMARTSM007171.5000030697110436E-1786134IPR001005SANT, DNA-binding
PfamPF002498.300000000000001E-1287130IPR014778Myb, DNA-binding
PfamPF002491.0E-1187130IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.601.8999985986584312E-1688136IPR012287Homeodomain-related
Gene3DG3DSA:1.10.10.601.8999985986584312E-1688136IPR012287Homeodomain-related
SuperFamilySSF466894.7E-993139IPR009057Homeodomain-like
SuperFamilySSF466894.7E-993139IPR009057Homeodomain-like