You are querying gene by "AT5G05580".

Locus: AT5G05580 Alias: FAD8

Hormone Evidence Function category Gene Description PMID
jasmonic acidMutant Hormone biosynthesis Encodes a temperature sensitive plastidic fatty acid desaturase 7846164

Basic gene information ( show / hide contents )

Locus AT5G05580 | Chromosome: 5 | Strand: +
Description Encodes a temperature sensitive plastidic fatty acid desaturase
FAD8( alias )
Gene model
AT5G05580.1 | From: 1664135 | To: 1666528
AT5G05580.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
omega-3 fatty acid desaturase activity PMID: 7846164
chloroplast PMID: 7846164
fatty acid biosynthetic process PMID: 7846164
response to temperature stimulus PMID: 7846164
KEGG pathway This gene participates in 4 pathways:
Pathway Enzyme
Androgen and estrogen metabolism fatty acid desaturase
1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation fatty acid desaturase
Benzoate degradation via hydroxylation fatty acid desaturase
Two-component system fatty acid desaturase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
fad8 7846164 mutant
fad3-2 fad7-2 fad8 12239389 mutant

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT5G05580.1 
length: 1687 
miRNA : ath-miR2938
length: 21 
mfe: -25.4 kcal/mol 
p-value: 0.049964 
position  676 
target 5' A   U G         U    C 
miRNA  3' G   U G         U      

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_34061
NP_187727Arabidopsis thaliana
NP_196177 ( AT5G05580 )Arabidopsis thaliana
56237Chlamydomonas reinhardtii
NP_001060733Oryza sativa Japonica Group
e_gw1.98.104.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_690155Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_650009Physcomitrella patens subsp. patens
28176.m000273Ricinus communis
29814.m000719Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF119607.599999999999976E-481126IPR021863Protein of unknown function DUF3474
PfamPF004871.6000000000000007E-31133388IPR005804Fatty acid desaturase, type 1