You are querying gene by "AT5G05580".

Locus: AT5G05580 Alias: FAD8

Hormone Evidence Function category Gene Description PMID
jasmonic acidMutant Hormone biosynthesis Encodes a temperature sensitive plastidic fatty acid desaturase 7846164

Basic gene information ( show / hide contents )

Locus AT5G05580 | Chromosome: 5 | Strand: +
Description Encodes a temperature sensitive plastidic fatty acid desaturase
Alias
FAD8( alias )
Gene model
AT5G05580.1 | From: 1664135 | To: 1666528
Sequence
AT5G05580.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
omega-3 fatty acid desaturase activity PMID: 7846164
cellular_component
chloroplast PMID: 7846164
biological_process
fatty acid biosynthetic process PMID: 7846164
response to temperature stimulus PMID: 7846164
KEGG pathway This gene participates in 4 pathways:
Pathway Enzyme
Androgen and estrogen metabolism fatty acid desaturase
1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation fatty acid desaturase
Benzoate degradation via hydroxylation fatty acid desaturase
Two-component system fatty acid desaturase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
fad8 7846164 mutant
fad3-2 fad7-2 fad8 12239389 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G05580.1 
length: 1687 
miRNA : ath-miR2938
length: 21 
 
mfe: -25.4 kcal/mol 
p-value: 0.049964 
 
position  676 
target 5' A   U G         U    C 
           UGG A CUUCUCGAA GAUC  
           ACC U GGAGAGUUU CUAG  
miRNA  3' G   U G         U      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_34061
AccessionTaxon
NP_187727Arabidopsis thaliana
NP_196177 ( AT5G05580 )Arabidopsis thaliana
56237Chlamydomonas reinhardtii
NP_001060733Oryza sativa Japonica Group
e_gw1.98.104.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_690155Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_650009Physcomitrella patens subsp. patens
28176.m000273Ricinus communis
29814.m000719Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF119607.599999999999976E-481126IPR021863Protein of unknown function DUF3474
PfamPF004871.6000000000000007E-31133388IPR005804Fatty acid desaturase, type 1