You are querying gene by "AT5G04240".

Locus: AT5G04240 Alias: ELF6

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT5G04240 | Chromosome: 5 | Strand: +
Description
Alias
ELF6( alias )
Gene model
AT5G04240.1 | From: 1169545 | To: 1174879
Sequence
AT5G04240.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 11118137
cellular_component
intracellular PMID:
biological_process
regulation of transcription PMID: 11118137
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G04240.1 
length: 4263 
miRNA : ath-miR780.1
length: 21 
 
mfe: -30.9 kcal/mol 
p-value: 0.014628 
 
position  1550 
target 5' C   G   C U            G 
           ACU GCU U GCAGCUGCUGGA  
           UGG CGA G UGUCGACGAUCU  
miRNA  3'     A     U              
 
 
target: AT5G04240.1 
length: 4263 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.031179 
 
position  438 
target 5' A       U           C 
           GGAACGG UAAGGAACUGG  
           CUUUGCU GUUCUUUGACU  
miRNA  3' A       U           A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_51681
AccessionTaxon
NP_196044 ( AT5G04240 )Arabidopsis thaliana
estExt_fgenesh1_pg.C_1380108Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_420046Physcomitrella patens subsp. patens
28507.m000165Ricinus communis
NP_001045137Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM005451.5999988934925166E-151555IPR003349Transcription factor jumonji, JmjN
PROSITEPS511830.01657IPR003349Transcription factor jumonji, JmjN
PfamPF023756.60000000000002E-131750IPR003349Transcription factor jumonji, JmjN
SMARTSM005583.299990775033228E-45259428IPR003347Transcription factor jumonji/aspartyl beta-hydroxylase
PROSITEPS511840.0262428IPR003347Transcription factor jumonji/aspartyl beta-hydroxylase
PfamPF023731.4000000000000064E-34292411IPR013129Transcription factor jumonji
SMARTSM0035557.0000021701946912281250IPR015880Zinc finger, C2H2-like
SMARTSM003550.04899999517823594412511275IPR015880Zinc finger, C2H2-like
PROSITEPS501570.012511280IPR007087Zinc finger, C2H2-type
PROSITEPS000280.012531275IPR007087Zinc finger, C2H2-type
Gene3DG3DSA:3.30.160.602.4000006166713858E-412781307IPR013087Zinc finger, C2H2-type/integrase, DNA-binding
SMARTSM003550.002800000431182339412811305IPR015880Zinc finger, C2H2-like
PROSITEPS501570.012811310IPR007087Zinc finger, C2H2-type
PROSITEPS000280.012831305IPR007087Zinc finger, C2H2-type
SMARTSM003550.0949999985106437713111337IPR015880Zinc finger, C2H2-like
PROSITEPS501570.013111340IPR007087Zinc finger, C2H2-type
PROSITEPS000280.013131337IPR007087Zinc finger, C2H2-type