You are querying gene by "AT5G03780".

Locus: AT5G03780 Alias: TRFL10

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT5G03780 | Chromosome: 5 | Strand: -
Description response to salicylic acid stimulus
Alias
TRFL10( alias )
Gene model
AT5G03780.1 | From: 999101 | To: 1001028
Sequence
AT5G03780.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
biological_process
response to salicylic acid stimulus PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G03780.1 
length: 1509 
miRNA : ath-miR413
length: 21 
 
mfe: -26.5 kcal/mol 
p-value: 0.012563 
 
position  675 
target 5' A      U         G  G 
           UGCGGA CAAGGGAAA UG  
           ACGUCU GUUCUCUUU AU  
miRNA  3' C      U         G  A 
 
 
target: AT5G03780.1 
length: 1509 
miRNA : ath-miR775
length: 20 
 
mfe: -27.1 kcal/mol 
p-value: 0.010756 
 
position  276 
target 5' A C                 U 
           G CGCUGCUGGAC UUGGA  
           C GUGACGAUCUG AGCUU  
miRNA  3' A C           U       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_51368
AccessionTaxon
NP_176970Arabidopsis thaliana
27810.m000638Ricinus communis
NP_195998 ( AT5G03780 )Arabidopsis thaliana
NP_001065819Oryza sativa Japonica Group
30170.m014226Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.10.603.799998626447902E-7338414IPR012287Homeodomain-related
SuperFamilySSF466894.1E-6340414IPR009057Homeodomain-like
PROSITEPS500900.0342403IPR017877MYB-like
SMARTSM007170.04300000526153366346405IPR001005SANT, DNA-binding