You are querying gene by "AT5G02840".

Locus: AT5G02840 Alias: LCL1

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
ethyleneGeneOntology - response to ethylene stimulus 16463103
abscisic acidGeneOntology - response to abscisic acid stimulus 16463103
auxinGeneOntology - response to auxin stimulus 16463103
gibberellinGeneOntology - response to gibberellin stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT5G02840 | Chromosome: 5 | Strand: +
Description response to jasmonic acid stimulus
Alias
LCL1( alias )
Gene model
AT5G02840.1 | From: 648702 | To: 651970
AT5G02840.2 | From: 648704 | To: 651494
AT5G02840.3 | From: 648702 | To: 651956
Sequence
AT5G02840.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G02840.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G02840.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
biological_process
response to auxin stimulus PMID: 16463103
regulation of transcription, DNA-dependent PMID:
response to jasmonic acid stimulus PMID: 16463103
response to gibberellin stimulus PMID: 16463103
response to ethylene stimulus PMID: 16463103
response to abscisic acid stimulus PMID: 16463103
response to salicylic acid stimulus PMID: 16463103
response to cadmium ion PMID: 16463103
response to salt stress PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G02840.1 
length: 1413 
miRNA : ath-miR1886.1
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.003327 
 
position  3 
target 5' G   A     G           U 
           GAU UCGUC UCAUUUCUCUC  
           CUA AGUAG AGUGAAGAGAG  
miRNA  3'     A                 U 
 
 
target: AT5G02840.2 
length: 1254 
miRNA : ath-miR1886.1
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.002807 
 
position  1 
target 5' G   A     G           U 
           GAU UCGUC UCAUUUCUCUC  
           CUA AGUAG AGUGAAGAGAG  
miRNA  3'     A                 U 
 
 
target: AT5G02840.3 
length: 1377 
miRNA : ath-miR1886.1
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.003208 
 
position  3 
target 5' G   A     G           U 
           GAU UCGUC UCAUUUCUCUC  
           CUA AGUAG AGUGAAGAGAG  
miRNA  3'     A                 U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_18786
AccessionTaxon
NP_001030662Arabidopsis thaliana
NP_001031823Arabidopsis thaliana
NP_187571Arabidopsis thaliana
NP_568108Arabidopsis thaliana
NP_850756 ( AT5G02840 )Arabidopsis thaliana
123164Chlamydomonas reinhardtii
fgenesh1_pg.scaffold_198000070Physcomitrella patens subsp. patens
gw1.46.107.1Physcomitrella patens subsp. patens
29805.m001497Ricinus communis
NP_568776Arabidopsis thaliana
NP_851177Arabidopsis thaliana
NP_001056559Oryza sativa Japonica Group
NP_001058324Oryza sativa Japonica Group
30169.m006616Ricinus communis
e_gw1.04.00.501.1Ostreococcus tauri
fgenesh1_pg.scaffold_160000002Physcomitrella patens subsp. patens
NP_001047742Oryza sativa Japonica Group
e_gw1.06.00.251.1Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF466893.2E-1542100IPR009057Homeodomain-like
SuperFamilySSF466893.2E-1542100IPR009057Homeodomain-like
PROSITEPS512940.04397IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PROSITEPS512940.04397IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
TIGRFAMTIGR015574.600000443308617E-234696IPR006447Myb-like DNA-binding domain, SHAQKYF class
TIGRFAMTIGR015574.600000443308617E-234696IPR006447Myb-like DNA-binding domain, SHAQKYF class
SMARTSM007174.399999674397471E-104795IPR001005SANT, DNA-binding
SMARTSM007174.399999674397471E-104795IPR001005SANT, DNA-binding
PfamPF002493.2999999999999965E-74892IPR014778Myb, DNA-binding
PfamPF002493.500000000000003E-74892IPR014778Myb, DNA-binding