You are querying gene by "AT5G02310".

Locus: AT5G02310 Alias: PRT6

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. 19255443

Basic gene information ( show / hide contents )

Locus AT5G02310 | Chromosome: 5 | Strand: +
Description Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.
Alias
PRT6( alias )
Gene model
AT5G02310.1 | From: 474277 | To: 482781
Sequence
AT5G02310.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
ubiquitin-protein ligase activity PMID: 17572409
biological_process
ubiquitin-dependent protein catabolic process PMID: 17572409
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
prt6-1 19255443 mutant
prt6-2 19255443 mutant
prt6-4 19255443 mutant
prt6-4 abi1-1 19255443 mutant
prt6-4 aba1-1 19255443 mutant
prt6-4 rgl2-1 19255443 mutant
prt6-4 abi3-8 19255443 mutant
prt6-4 abi3-10 19255443 mutant
prt6-4 abi5-1 19255443 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G02310.1 
length: 6252 
miRNA : ath-miR414
length: 21 
 
mfe: -24.1 kcal/mol 
p-value: 0.045455 
 
position  1499 
target 5' U    A G               A 
           UGAC A UG UGAUGGAGAUGG  
           ACUG U AC ACUACUUCUACU  
miRNA  3'      C    U              
 
 
target: AT5G02310.1 
length: 6252 
miRNA : ath-miR830*
length: 22 
 
mfe: -25.0 kcal/mol 
p-value: 0.015549 
 
position  5857 
target 5' U    G  U               G 
           ACCU GA AC GUUUGGAGAAGA  
           UGGA UU UG UAAACCUCUUCU  
miRNA  3' U          A              
 
 
target: AT5G02310.1 
length: 6252 
miRNA : ath-miR865-3p
length: 21 
 
mfe: -21.7 kcal/mol 
p-value: 0.058435 
 
position  5860 
target 5' C      C      A      G 
           UGGAUA GUUUGG GAAGAG  
           ACCUAU UAAACU CUUUUU  
miRNA  3' A      U      C        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_13471
AccessionTaxon
e_gw1.356.1.1Physcomitrella patens subsp. patens
e_gw1.67.18.1Physcomitrella patens subsp. patens
NP_001042017Oryza sativa Japonica Group
29846.m000182Ricinus communis
e_gw1.96.10.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_350091Physcomitrella patens subsp. patens
NP_195851 ( AT5G02310 )Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM003963.2e-22119188IPR013993Zinc finger, N-recognin, metazoa
PROSITEPS5115710.734119189IPR003126Zinc finger, N-recognin
PfamPF022071e-20120188IPR003126Zinc finger, N-recognin