You are querying gene by "AT5G01600".

Locus: AT5G01600 Alias: ATFER1

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT5G01600 | Chromosome: 5 | Strand: -
Description Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Alias
ATFER1( alias )
Gene model
AT5G01600.1 | From: 227950 | To: 230048
Sequence
AT5G01600.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
iron ion binding PMID: 11672431
ferric iron binding PMID:
cellular_component
chloroplast PMID: 8761454
biological_process
cellular iron ion homeostasis PMID:
iron ion transport PMID:
response to cold PMID: 14535880
response to iron ion PMID: 11672431
response to hydrogen peroxide PMID: 11672431
response to bacterium PMID: 15998312
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G01600.1 
length: 1421 
miRNA : ath-miR854a
length: 21 
 
mfe: -32.8 kcal/mol 
p-value: 0.003074 
 
position  377 
target 5' U              A     A 
           UCCUCUUUCUUAUC UCAUC  
           AGGAGGAGGGAUAG AGUAG  
miRNA  3' G              G       
 
 
target: AT5G01600.1 
length: 1421 
miRNA : ath-miR854b
length: 21 
 
mfe: -32.8 kcal/mol 
p-value: 0.001993 
 
position  377 
target 5' U              A     A 
           UCCUCUUUCUUAUC UCAUC  
           AGGAGGAGGGAUAG AGUAG  
miRNA  3' G              G       
 
 
target: AT5G01600.1 
length: 1421 
miRNA : ath-miR854c
length: 21 
 
mfe: -32.8 kcal/mol 
p-value: 0.002636 
 
position  377 
target 5' U              A     A 
           UCCUCUUUCUUAUC UCAUC  
           AGGAGGAGGGAUAG AGUAG  
miRNA  3' G              G       
 
 
target: AT5G01600.1 
length: 1421 
miRNA : ath-miR854d
length: 21 
 
mfe: -32.8 kcal/mol 
p-value: 0.002099 
 
position  377 
target 5' U              A     A 
           UCCUCUUUCUUAUC UCAUC  
           AGGAGGAGGGAUAG AGUAG  
miRNA  3' G              G       
 
 
target: AT5G01600.1 
length: 1421 
miRNA : ath-miR854e
length: 21 
 
mfe: -32.8 kcal/mol 
p-value: 0.002786 
 
position  377 
target 5' U              A     A 
           UCCUCUUUCUUAUC UCAUC  
           AGGAGGAGGGAUAG AGUAG  
miRNA  3' G              G       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11188
AccessionTaxon
NP_195780 ( AT5G01600 )Arabidopsis thaliana
157947Chlamydomonas reinhardtii
NP_001065936Oryza sativa Japonica Group
e_gw1.126.54.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_590206Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_510141Physcomitrella patens subsp. patens
29820.m000995Ricinus communis
gw1.02.00.449.1Ostreococcus tauri
NP_181559Arabidopsis thaliana
NP_187716Arabidopsis thaliana
NP_191168Arabidopsis thaliana
NP_001065540Oryza sativa Japonica Group
29729.m002277Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR114311.7e-1703255IPR001519Ferritin, N-terminal
Gene3DG3DSA:1.20.1260.102.8e-6083255IPR012347Ferritin-related
SuperFamilySSF472401.6e-5984255IPR009078Ferritin/ribonucleotide reductase-like
PROSITEPS5090542.19888241IPR009040Ferritin-like
PfamPF002101.2e-4097240IPR008331Ferritin/Dps protein
PROSITEPS00204NA208228IPR014034Ferritin, conserved site