You are querying gene by "AT4G39950".

Locus: AT4G39950 Alias: CYP79B2

Hormone Evidence Function category Gene Description PMID
auxinTransgenic Hormone biosynthesis Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. 19263076
Mutant Hormone biosynthesis Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. 19263076

Basic gene information ( show / hide contents )

Locus AT4G39950 | Chromosome: 4 | Strand: +
Description Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.
Alias
CYP79B2( alias )
Gene model
AT4G39950.1 | From: 18525240 | To: 18527573
Sequence
AT4G39950.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
oxygen binding PMID:
cellular_component
chloroplast PMID:
biological_process
camalexin biosynthetic process PMID: 16167893
indoleacetic acid biosynthetic process PMID: 15772288
tryptophan catabolic process PMID: 10681464
response to bacterium PMID: 17573535
KEGG pathway This gene participates in 5 pathways:
Pathway Enzyme
Ascorbate and aldarate metabolism
Limonene and pinene degradation
Stilbene, coumarine and lignin biosynthesis
gamma-Hexachlorocyclohexane degradation
Fluorene degradation
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
2X 19263076 mutant
3X AlcA 19263076 transgenic
2X AlcA 19263076 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G39950.1 
length: 1986 
miRNA : ath-miR159a
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.059179 
 
position  421 
target 5' A   C          C   G  G 
           AGA GCUCUCUUCG GUC AG  
           UCU CGAGGGAAGU UAG UU  
miRNA  3' A                  G  U 
 
 
target: AT4G39950.1 
length: 1986 
miRNA : ath-miR159b
length: 21 
 
mfe: -25.4 kcal/mol 
p-value: 0.052450 
 
position  420 
target 5' C    C          C   G  G 
           AAGA GCUCUCUUCG GUC AG  
           UUCU CGAGGGAAGU UAG UU  
miRNA  3'                     G  U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_22350
AccessionTaxon
NP_179820Arabidopsis thaliana
NP_195705 ( AT4G39950 )Arabidopsis thaliana
NP_568153Arabidopsis thaliana
NP_001050517Oryza sativa Japonica Group
NP_001052147Oryza sativa Japonica Group
NP_001052148Oryza sativa Japonica Group
28438.m000050Ricinus communis
29910.m000911Ricinus communis
29910.m000912Ricinus communis
29910.m000914Ricinus communis
29910.m000917Ricinus communis
29910.m000920Ricinus communis
NP_680351Arabidopsis thaliana
29910.m000910Ricinus communis
30167.m000871Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR193830.020498IPR001128Cytochrome P450
Gene3DG3DSA:1.10.630.103.899998617952183E-9851511IPR001128Cytochrome P450
PfamPF000674.099999999999948E-7657523IPR001128Cytochrome P450
SuperFamilySSF482647.2E-10357531IPR001128Cytochrome P450
PRINTSPR004636.0999997712621124E-30111132IPR002401Cytochrome P450, E-class, group I
PRINTSPR004636.0999997712621124E-30205223IPR002401Cytochrome P450, E-class, group I
PRINTSPR004636.0999997712621124E-30325342IPR002401Cytochrome P450, E-class, group I
PRINTSPR003857.099998842111411E-5336353IPR001128Cytochrome P450
PRINTSPR004636.0999997712621124E-30345371IPR002401Cytochrome P450, E-class, group I
PRINTSPR004636.0999997712621124E-30388406IPR002401Cytochrome P450, E-class, group I
PRINTSPR003857.099998842111411E-5389400IPR001128Cytochrome P450
PRINTSPR004636.0999997712621124E-30429453IPR002401Cytochrome P450, E-class, group I
PRINTSPR004636.0999997712621124E-30467477IPR002401Cytochrome P450, E-class, group I
PRINTSPR003857.099998842111411E-5468477IPR001128Cytochrome P450
PROSITEPS000860.0470479IPR017972Cytochrome P450, conserved site
PRINTSPR004636.0999997712621124E-30477500IPR002401Cytochrome P450, E-class, group I