You are querying gene by "AT4G39850".

Locus: AT4G39850 Alias: CTS

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome. 20345608

Basic gene information ( show / hide contents )

Locus AT4G39850 | Chromosome: 4 | Strand: +
Description Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.
Alias
CTS( alias )
PED3( alias )
PXA1( alias )
Gene model
AT4G39850.1 | From: 18488513 | To: 18497130
Sequence
AT4G39850.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
ATPase activity, coupled to transmembrane movement of substances PMID: 11706205
cellular_component
peroxisome PMID: 12065405
biological_process
fatty acyl coenzyme A transport PMID: 12065405
fatty acid beta-oxidation PMID: 11706205
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
ped3-3 20345608 mutant
ped3 abi5 20345608 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G39850.1 
length: 4722 
miRNA : ath-miR447a
length: 22 
 
mfe: -26.1 kcal/mol 
p-value: 0.053400 
 
position  52 
target 5' G   U  U          G   U 
           GAC AG ACGUCUCGUU CCG  
           UUG UU UGUAGAGCAG GGU  
miRNA  3' G      U          G   U 
 
 
target: AT4G39850.1 
length: 4722 
miRNA : ath-miR447b
length: 22 
 
mfe: -26.1 kcal/mol 
p-value: 0.065631 
 
position  52 
target 5' G   U  U          G   U 
           GAC AG ACGUCUCGUU CCG  
           UUG UU UGUAGAGCAG GGU  
miRNA  3' G      U          G   U 
 
 
target: AT4G39850.1 
length: 4722 
miRNA : ath-miR854a
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.042844 
 
position  1 
target 5'    U   U          C    U 
          CUC CUC CUCUCUAUCU UAUC  
          GAG GAG GAGGGAUAGG GUAG  
miRNA  3'                   A      
 
 
target: AT4G39850.1 
length: 4722 
miRNA : ath-miR854b
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.045525 
 
position  1 
target 5'    U   U          C    U 
          CUC CUC CUCUCUAUCU UAUC  
          GAG GAG GAGGGAUAGG GUAG  
miRNA  3'                   A      
 
 
target: AT4G39850.1 
length: 4722 
miRNA : ath-miR854c
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.045397 
 
position  1 
target 5'    U   U          C    U 
          CUC CUC CUCUCUAUCU UAUC  
          GAG GAG GAGGGAUAGG GUAG  
miRNA  3'                   A      
 
 
target: AT4G39850.1 
length: 4722 
miRNA : ath-miR854d
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.045597 
 
position  1 
target 5'    U   U          C    U 
          CUC CUC CUCUCUAUCU UAUC  
          GAG GAG GAGGGAUAGG GUAG  
miRNA  3'                   A      
 
 
target: AT4G39850.1 
length: 4722 
miRNA : ath-miR854e
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.046611 
 
position  1 
target 5'    U   U          C    U 
          CUC CUC CUCUCUAUCU UAUC  
          GAG GAG GAGGGAUAGG GUAG  
miRNA  3'                   A      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10229
AccessionTaxon
NP_568072 ( AT4G39850 )Arabidopsis thaliana
NP_001054425Oryza sativa Japonica Group
gw1.02.00.103.1Ostreococcus tauri
estExt_Genewise1.C_1500091Physcomitrella patens subsp. patens
estExt_fgenesh2_pm.C_1050002Physcomitrella patens subsp. patens
30186.m001316Ricinus communis
99858Chlamydomonas reinhardtii
e_gw1.54.328.1Physcomitrella patens subsp. patens
NP_175837Arabidopsis thaliana
NP_001042413Oryza sativa Japonica Group
e_gw1.218.8.1Physcomitrella patens subsp. patens
30162.m001256Ricinus communis
e_gw1.84.172.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_360227Physcomitrella patens subsp. patens
1100010122Ostreococcus tauri
1300010309Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF901234.6E-760357IPR011527ABC transporter, transmembrane domain, type 1
PfamPF064723.7000000000000427E-8583361IPR010509ABC transporter, N-terminal
PROSITEPS509290.0153343IPR017940ABC transporter integral membrane type 1
PROSITEPS508930.0448695IPR003439ABC transporter-like
SMARTSM003828.399998585923064E-8473652IPR003593ATPase, AAA+ type, core
PfamPF000056.80000000000001E-6488610IPR003439ABC transporter-like
PROSITEPS002110.0582596IPR017871ABC transporter, conserved site
PfamPF064726.799999999999901E-827371012IPR010509ABC transporter, N-terminal
SuperFamilySSF901231.5E-6751998IPR011527ABC transporter, transmembrane domain, type 1
PROSITEPS509290.0760998IPR017940ABC transporter integral membrane type 1
PROSITEPS508930.010911337IPR003439ABC transporter-like
SMARTSM003820.04399999674397466611221333IPR003593ATPase, AAA+ type, core
PfamPF000050.01399999999999999911701280IPR003439ABC transporter-like
PROSITEPS002110.012521266IPR017871ABC transporter, conserved site