You are querying gene by "AT4G39780".

Locus: AT4G39780 Alias: AT4G39780

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT4G39780 | Chromosome: 4 | Strand: -
Description encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
AT4G39780( alias )
Gene model
AT4G39780.1 | From: 18457951 | To: 18459174
AT4G39780.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
DNA binding PMID: 9192694
transcription factor activity PMID: 11118137
nucleus PMID: 9192694
regulation of transcription, DNA-dependent PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT4G39780.1 
length: 1224 
miRNA : ath-miR776
length: 21 
mfe: -22.6 kcal/mol 
p-value: 0.025130 
position  417 
target 5' A      U        G     C 
miRNA  3'     U  U        G       

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_37312
NP_177931Arabidopsis thaliana
NP_001048142Oryza sativa Japonica Group
28206.m000104Ricinus communis
29908.m006005Ricinus communis
NP_179810Arabidopsis thaliana
NP_195688 ( AT4G39780 )Arabidopsis thaliana
e_gw1.187.17.1Physcomitrella patens subsp. patens
e_gw1.335.26.1Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.730.108.40001703163729E-2491152IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
SuperFamilySSF541714.1E-2591152IPR016177DNA-binding, integrase-type
SMARTSM003803.800006970935884E-3792155IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PROSITEPS510320.092149IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003671.899998598658641E-1193104IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PfamPF008471.7000000000000002E-1593142IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003671.899998598658641E-11115131IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding