You are querying gene by "AT4G39780".

Locus: AT4G39780 Alias: AT4G39780

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT4G39780 | Chromosome: 4 | Strand: -
Description encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Alias
AT4G39780( alias )
Gene model
AT4G39780.1 | From: 18457951 | To: 18459174
Sequence
AT4G39780.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 9192694
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 9192694
biological_process
regulation of transcription, DNA-dependent PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G39780.1 
length: 1224 
miRNA : ath-miR776
length: 21 
 
mfe: -22.6 kcal/mol 
p-value: 0.025130 
 
position  417 
target 5' A      U        G     C 
           AAC UC AUAGAGGA UUAGA  
           UUG AG UAUCUUCU AAUCU  
miRNA  3'     U  U        G       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_37312
AccessionTaxon
NP_177931Arabidopsis thaliana
NP_001048142Oryza sativa Japonica Group
28206.m000104Ricinus communis
29908.m006005Ricinus communis
NP_179810Arabidopsis thaliana
NP_195688 ( AT4G39780 )Arabidopsis thaliana
e_gw1.187.17.1Physcomitrella patens subsp. patens
e_gw1.335.26.1Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.730.108.40001703163729E-2491152IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
SuperFamilySSF541714.1E-2591152IPR016177DNA-binding, integrase-type
SMARTSM003803.800006970935884E-3792155IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PROSITEPS510320.092149IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003671.899998598658641E-1193104IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PfamPF008471.7000000000000002E-1593142IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003671.899998598658641E-11115131IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding