You are querying gene by "AT4G38630".

Locus: AT4G38630 Alias: ATMCB1

Hormone Evidence Function category Gene Description PMID
cytokininGeneOntology - response to cytokinin stimulus 12671091
auxinGeneOntology - response to auxin stimulus 12671091
abscisic acidMutant Hormone signal transduction encodes a component for the 26S proteasome subunit. 12671091
GeneOntology - response to abscisic acid stimulus 12671091

Basic gene information ( show / hide contents )

Locus AT4G38630 | Chromosome: 4 | Strand: -
Description encodes a component for the 26S proteasome subunit.
Alias
ATMCB1( alias )
MBP1( alias )
MCB1( alias )
RPN10( alias )
Gene model
AT4G38630.1 | From: 18057124 | To: 18059534
Sequence
AT4G38630.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
peptide receptor activity PMID: 9442033
cellular_component
nucleus PMID: 11742986
proteasome complex PMID: 12671091
proteasome regulatory particle, base subcomplex PMID: 9741626
biological_process
response to auxin stimulus PMID: 12671091
pollen development PMID: 12671091
leaf senescence PMID: 12671091
response to misfolded protein PMID: 17971041
root hair elongation PMID: 12671091
ubiquitin-dependent protein catabolic process PMID: 10363660
response to salt stress PMID: 12671091
response to cytokinin stimulus PMID: 12671091
response to DNA damage stimulus PMID: 12671091
response to heat PMID: 17971041
protein catabolic process PMID: 9442033
regulation of seed germination PMID: 12671091
response to abscisic acid stimulus PMID: 12671091
response to sucrose stimulus PMID: 12671091
proteasomal ubiquitin-dependent protein catabolic process PMID: 17971041
post-embryonic root development PMID: 12671091
stamen formation PMID: 12671091
leaf development PMID: 12671091
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Proteasome 26S proteasome regulatory subunit N10
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
rpn10-1 12671091 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G38630.1 
length: 1469 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -22.1 kcal/mol 
p-value: 0.069624 
 
position  893 
target 5' G  C   U        C     A 
           GA AAC GACAAGAA GCUGA  
           CU UUG UUGUUCUU UGACU  
miRNA  3' A      C              A 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT4G38630AT1G04240negativeotherN/Amolecular12671091
AT4G38630AT1G04240negativeprotein degradationN/AGO/others12671091
AT4G38630AT1G04550negativeotherN/Amolecular12671091
AT4G38630AT1G15580negativeotherN/Amolecular12671091
AT4G38630AT2G32410negativeotherN/Amolecular12671091
AT4G38630AT2G36270negativeotherN/Amutance12671091
AT4G38630AT2G38120negativeotherN/Amolecular12671091
AT4G38630AT3G15540negativeotherN/Amolecular12671091
AT4G38630AT3G48750negativeotherN/Amutance12671091
AT4G38630AT4G14550negativeotherN/Amolecular12671091
AT4G38630AT4G14560negativeotherN/Amolecular12671091
AT4G38630AT4G34160negativeotherN/Amutance10712535
AT4G38630AT5G25890negativeotherN/Amolecular12671091
AT4G38630AT5G43700negativeotherN/Amolecular12671091
AT4G38630AUX3negativeotherN/Amolecular12671091
AT4G38630IAAnegativeotherN/Amutance12671091
AT4G38630iPnegativeotherN/Amutance12671091

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11301
AccessionTaxon
NP_195575 ( AT4G38630 )Arabidopsis thaliana
81593Chlamydomonas reinhardtii
NP_001049527Oryza sativa Japonica Group
gw1.02.00.425.1Ostreococcus tauri
estExt_fgenesh1_pg.C_140185Physcomitrella patens subsp. patens
29868.m000344Ricinus communis
29956.m000105Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM003271.0999990912078717E-92176IPR002035von Willebrand factor, type A
PROSITEPS502340.05190IPR002035von Willebrand factor, type A
PfamPF040560.0054000000000000016114IPR007198Ssl1-like
SMARTSM0072611.999998570310131221240IPR003903Ubiquitin interacting motif
PROSITEPS503300.0221240IPR003903Ubiquitin interacting motif
PfamPF028093.7999999999999994223236IPR003903Ubiquitin interacting motif
SMARTSM0072629.00000362699078282301IPR003903Ubiquitin interacting motif
PROSITEPS503300.0282301IPR003903Ubiquitin interacting motif
PfamPF028090.13305319IPR003903Ubiquitin interacting motif
SMARTSM007260.01700000156104738305324IPR003903Ubiquitin interacting motif
PROSITEPS503300.0305324IPR003903Ubiquitin interacting motif