You are querying gene by "AT4G38620".

Locus: AT4G38620 Alias: ATMYB4

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - response to ethylene stimulus 16463103
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
auxinGeneOntology - response to auxin stimulus 16463103
abscisic acidGeneOntology - response to abscisic acid stimulus 16463103
gibberellinGeneOntology - response to gibberellin stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT4G38620 | Chromosome: 4 | Strand: +
Description response to salicylic acid stimulus
Alias
ATMYB4( alias )
MYB4( alias )
Gene model
AT4G38620.1 | From: 18053545 | To: 18054993
Sequence
AT4G38620.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 17993626
transcription factor activity PMID: 11118137
biological_process
response to auxin stimulus PMID: 16463103
response to gibberellin stimulus PMID: 16463103
response to jasmonic acid stimulus PMID: 16463103
response to UV-B PMID: 11080161
response to ethylene stimulus PMID: 16463103
response to abscisic acid stimulus PMID: 16463103
response to salicylic acid stimulus PMID: 16463103
negative regulation of transcription PMID: 11080161
response to cadmium ion PMID: 16463103
response to salt stress PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G38620.1 
length: 1287 
miRNA : ath-miR395b
length: 21 
 
mfe: -31.9 kcal/mol 
p-value: 0.004458 
 
position  120 
target 5' A   G    A            A 
           AGU CCCC CCAAAUGCUUCA  
           UCA GGGG GGUUUGUGAAGU  
miRNA  3' C                     C 
 
 
target: AT4G38620.1 
length: 1287 
miRNA : ath-miR395c
length: 21 
 
mfe: -31.9 kcal/mol 
p-value: 0.002896 
 
position  120 
target 5' A   G    A            A 
           AGU CCCC CCAAAUGCUUCA  
           UCA GGGG GGUUUGUGAAGU  
miRNA  3' C                     C 
 
 
target: AT4G38620.1 
length: 1287 
miRNA : ath-miR395f
length: 21 
 
mfe: -31.9 kcal/mol 
p-value: 0.002105 
 
position  120 
target 5' A   G    A            A 
           AGU CCCC CCAAAUGCUUCA  
           UCA GGGG GGUUUGUGAAGU  
miRNA  3' C                     C 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_58899
AccessionTaxon
NP_195574 ( AT4G38620 )Arabidopsis thaliana
NP_001062438Oryza sativa Japonica Group
NP_001063796Oryza sativa Japonica Group
29602.m000218Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR106414.300001706461758E-1013154IPR015495Myb transcription factor
PROSITEPS512940.0961IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.604.199997713396018E-151264IPR012287Homeodomain-related
SMARTSM007174.799997768362738E-141363IPR001005SANT, DNA-binding
PfamPF002492.200000000000004E-121461IPR014778Myb, DNA-binding
SuperFamilySSF466892.3E-231483IPR009057Homeodomain-like
PROSITEPS512940.062116IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SMARTSM007173.600004339659267E-1866114IPR001005SANT, DNA-binding
PfamPF002491.3000000000000008E-1367111IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.601.9999963603453647E-1868116IPR012287Homeodomain-related
SuperFamilySSF466891.3E-1386146IPR009057Homeodomain-like