You are querying gene by "AT4G38130".

Locus: AT4G38130 Alias: ATHD1

Hormone Evidence Function category Gene Description PMID
ethyleneTransgenic Hormone signal transduction Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. 15749761
Jasmonic acidTransgenic Hormone signal transduction Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. 15749761

Basic gene information ( show / hide contents )

Locus AT4G38130 | Chromosome: 4 | Strand: -
Description Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.
Alias
ATHD1( alias )
HD1( alias )
HDA1( alias )
HDA19( alias )
HDA19( alias )
RPD3A( alias )
Gene model
AT4G38130.1 | From: 17896286 | To: 17899485
AT4G38130.2 | From: 17896286 | To: 17899485
Sequence
AT4G38130.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G38130.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
histone deacetylase activity PMID:
protein binding PMID: 16429262
negative regulator of basal transcription activity PMID: 16429262
cellular_component
nucleus PMID: 16763149
biological_process
negative regulation of transcription PMID: 15994908
jasmonic acid and ethylene-dependent systemic resistance PMID: 15749761
multicellular organismal development PMID: 11134508
DNA mediated transformation PMID: 17827277
histone acetylation PMID: 17085686
histone deacetylation PMID:
KEGG pathway This gene participates in 2 pathways:
Pathway Enzyme
Notch signaling pathway histone deacetylase 1/2
Cell cycle - mammals histone deacetylase 1/2
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  ethylene     jasmonic acid  

[   ethylene   ]

Genotype PMID Type
35S:HDA19 15749761 transgenic
HDA19-RNA 15749761 transgenic

[   jasmonic acid   ]

Genotype PMID Type
35S:HDA19 15749761 transgenic
HDA19-RNA 15749761 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

No miRNA interaction information for this gene.

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10203
AccessionTaxon
NP_001078511Arabidopsis thaliana
NP_195526 ( AT4G38130 )Arabidopsis thaliana
NP_201116Arabidopsis thaliana
NP_001046284Oryza sativa Japonica Group
NP_001057943Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_02.00010172Ostreococcus tauri
e_gw1.223.109.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3510032Physcomitrella patens subsp. patens
30147.m013886Ricinus communis
NP_190054Arabidopsis thaliana
137868Chlamydomonas reinhardtii
estExt_fgenesh1_pg.C_1800041Physcomitrella patens subsp. patens
29791.m000547Ricinus communis
gw1.02.00.256.1Ostreococcus tauri
103457Chlamydomonas reinhardtii
NP_001046287Oryza sativa Japonica Group
29659.m000144Ricinus communis
NP_001061596Oryza sativa Japonica Group
NP_001067440Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0379130.015449IPR003084Histone deacetylase
PIRPIRSF037913015449IPR003084Histone deacetylase
Gene3DG3DSA:3.40.800.204.1E-12716382IPR000286Histone deacetylase superfamily
Gene3DG3DSA:3.40.800.204.1e-12716382IPR000286Histone deacetylase superfamily
PfamPF008501.2000000000000142E-8131325IPR000286Histone deacetylase superfamily
PfamPF008501.8e-8431325IPR000286Histone deacetylase superfamily
PRINTSPR012715.600049082909737E-653855IPR003084Histone deacetylase
PRINTSPR012718.4e-653855IPR003084Histone deacetylase
PANTHERPTHR106250.050469IPR000286Histone deacetylase superfamily
PANTHERPTHR10625:SF280.050469IPR003084Histone deacetylase
PANTHERPTHR106256.1e-28150480IPR000286Histone deacetylase superfamily
PANTHERPTHR10625:SF286.1e-28150480IPR003084Histone deacetylase
PRINTSPR012715.600049082909737E-657189IPR003084Histone deacetylase
PRINTSPR012718.4e-657189IPR003084Histone deacetylase
PRINTSPR012715.600049082909737E-65102119IPR003084Histone deacetylase
PRINTSPR012718.4e-65102119IPR003084Histone deacetylase
PRINTSPR012715.600049082909737E-65123143IPR003084Histone deacetylase
PRINTSPR012718.4e-65123143IPR003084Histone deacetylase
PRINTSPR012701.2999992446817899E-23145168IPR000286Histone deacetylase superfamily
PRINTSPR012701.5e-23145168IPR000286Histone deacetylase superfamily
PRINTSPR012715.600049082909737E-65164180IPR003084Histone deacetylase
PRINTSPR012718.4e-65164180IPR003084Histone deacetylase
PRINTSPR012701.2999992446817899E-23177192IPR000286Histone deacetylase superfamily
PRINTSPR012701.5e-23177192IPR000286Histone deacetylase superfamily
PRINTSPR012715.600049082909737E-65223236IPR003084Histone deacetylase
PRINTSPR012718.4e-65223236IPR003084Histone deacetylase
PRINTSPR012715.600049082909737E-65240258IPR003084Histone deacetylase
PRINTSPR012718.4e-65240258IPR003084Histone deacetylase
PRINTSPR012701.2999992446817899E-23262272IPR000286Histone deacetylase superfamily
PRINTSPR012701.5e-23262272IPR000286Histone deacetylase superfamily