You are querying gene by "AT4G36800".

Locus: AT4G36800 Alias: RCE1

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 12682009

Basic gene information ( show / hide contents )

Locus AT4G36800 | Chromosome: 4 | Strand: -
Description response to auxin stimulus
Alias
RCE1( alias )
Gene model
AT4G36800.1 | From: 17340955 | To: 17342736
Sequence
AT4G36800.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
small conjugating protein ligase activity PMID:
NEDD8 ligase activity PMID: 12682009
cellular_component
cellular_component_unknown PMID:
biological_process
response to auxin stimulus PMID: 12682009
embryonic development PMID: 12682009
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G36800.2 
length: 941 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -24.1 kcal/mol 
p-value: 0.010943 
 
position  56 
target 5' C  U   U             U 
           GC GUG GUGUGGGUGUGAG  
           CG CGU UACGCCUAUAUUU  
miRNA  3' A      U             C 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11109
AccessionTaxon
NP_001154289 ( AT4G36800 )Arabidopsis thaliana
NP_568008Arabidopsis thaliana
692Chlamydomonas reinhardtii
NP_001061664Oryza sativa Japonica Group
NP_001062859Oryza sativa Japonica Group
fgenesh1_pm.C_Chr_04.0001000048Ostreococcus tauri
estExt_Genewise1.C_1020079Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_520096Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_610084Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_6000135Physcomitrella patens subsp. patens
gw1.45.181.1Physcomitrella patens subsp. patens
29646.m001060Ricinus communis
NP_565440Arabidopsis thaliana
NP_001064273Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR11621:SF174.7e-1101173IPR015580RUB1 conjugating enzyme Ubc12
SuperFamilySSF544951.2e-4422176IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.107.6e-4033176IPR016135Ubiquitin-conjugating enzyme/RWD-like
SMARTSM002122e-3533175IPR000608Ubiquitin-conjugating enzyme, E2
PROSITEPS5012728.16333164IPR000608Ubiquitin-conjugating enzyme, E2
PfamPF001791.4e-3734168IPR000608Ubiquitin-conjugating enzyme, E2
PROSITEPS00183NA102117IPR000608Ubiquitin-conjugating enzyme, E2