You are querying gene by "AT4G30960".

Locus: AT4G30960 Alias: CIPK6

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone transportion Encodes CBL-interacting protein kinase 6 (CIPK6). Required for development and salt tolerance. 19187042

Basic gene information ( show / hide contents )

Locus AT4G30960 | Chromosome: 4 | Strand: +
Description Encodes CBL-interacting protein kinase 6 (CIPK6). Required for development and salt tolerance.
Alias
CIPK6( alias )
SIP3( alias )
SNRK3.14( alias )
Gene model
AT4G30960.1 | From: 15067059 | To: 15069016
Sequence
AT4G30960.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
kinase activity PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
signal transduction PMID:
protein amino acid phosphorylation PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
atcipk6kd 19187042 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G30960.1 
length: 1958 
miRNA : ath-miR171a
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.012869 
 
position  1534 
target 5' A      C  G       C    U 
           GAUAUU GC GUGGCUC GUCG  
           CUAUAA CG CGCCGAG UAGU  
miRNA  3'        C          U      
 
 
target: AT4G30960.1 
length: 1958 
miRNA : ath-miR831
length: 22 
 
mfe: -26.9 kcal/mol 
p-value: 0.010909 
 
position  1272 
target 5' A                C    A 
           AGGAAGAG ACGGAGA GUUA  
           UUCUUCUC UGCUUCU UAGU  
miRNA  3' G        A       C      
 
 
target: AT4G30960.1 
length: 1958 
miRNA : ath-miR842
length: 21 
 
mfe: -30.0 kcal/mol 
p-value: 0.006149 
 
position  367 
target 5' U     A           G    U 
           GGA G AUGGAUCUGAC GUGG  
           CCU C UGCCUAGACUG UACU  
miRNA  3'     A             G      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_91415
AccessionTaxon
NP_194825 ( AT4G30960 )Arabidopsis thaliana
29003.m000064Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF561126.7E-9115325IPR011009Protein kinase-like domain
PfamPF000694.599999999999957E-7024278IPR017442Serine/threonine-protein kinase-like domain
SMARTSM002202.1999990098070715E-10524278IPR002290Serine/threonine-protein kinase domain
PROSITEPS500110.024278IPR000719Protein kinase, catalytic domain
PROSITEPS001070.03057IPR017441Protein kinase, ATP binding site
PANTHERPTHR229820.072438IPR020636Calcium/calmodulin-dependent protein kinase-like
PANTHERPTHR22982:SF450.072438IPR020660CBL-interacting protein kinase
PROSITEPS001080.0142154IPR008271Serine/threonine-protein kinase, active site
PROSITEPS508160.0310334IPR018451NAF/FISL domain
PfamPF038223.7E-20312373IPR004041NAF domain