You are querying gene by "AT4G30480".

Locus: AT4G30480 Alias: AtTPR1

Hormone Evidence Function category Gene Description PMID
ethyleneTransgenic Hormone signal transduction tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4); binding (TAIR:AT3G58620.1); Has 10494 Blast hits to 7864 proteins in 509 species: Archae - 360; Bacteria - 1926; Metazoa - 3500; Fungi - 950; Plants - 1004; Viruses - 24; Other Eukaryotes - 2730 (source: NCBI BLink). 19567478
auxinTransgenic Hormone signal transduction tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4); binding (TAIR:AT3G58620.1); Has 10494 Blast hits to 7864 proteins in 509 species: Archae - 360; Bacteria - 1926; Metazoa - 3500; Fungi - 950; Plants - 1004; Viruses - 24; Other Eukaryotes - 2730 (source: NCBI BLink). 19567478

Basic gene information ( show / hide contents )

Locus AT4G30480 | Chromosome: 4 | Strand: +
Description tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4); binding (TAIR:AT3G58620.1); Has 10494 Blast hits to 7864 proteins in 509 species: Archae - 360; Bacteria - 1926; Metazoa - 3500; Fungi - 950; Plants - 1004; Viruses - 24; Other Eukaryotes - 2730 (source: NCBI BLink).
Alias
AtTPR1( alias )
Gene model
AT4G30480.1 | From: 14897362 | To: 14899127
AT4G30480.2 | From: 14897362 | To: 14899127
AT4G30480.3 | From: 14897352 | To: 14899127
Sequence
AT4G30480.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G30480.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G30480.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
binding PMID:
cellular_component
cellular_component_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  ethylene     auxin  

[   ethylene   ]

Genotype PMID Type
AtTRP1F-GFP 19567478 transgenic

[   auxin   ]

Genotype PMID Type
AtTRP1F-GFP 19567478 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G30480.1 
length: 1210 
miRNA : ath-miR161.2
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.008247 
 
position  1036 
target 5' G        C           C 
           UAGUUGCU UUGAUGUAUUG  
           AUCAGUGA AGUUACGUAAC  
miRNA  3'          A           U 
 
 
target: AT4G30480.1 
length: 1210 
miRNA : ath-miR847
length: 21 
 
mfe: -27.0 kcal/mol 
p-value: 0.013991 
 
position  304 
target 5' G  G            A  A   U 
           AU AAGAAGGAGAGG AG UGG  
           UA UUCUUCUUCUCC UC ACU  
miRNA  3' G  G                     
 
 
target: AT4G30480.2 
length: 1165 
miRNA : ath-miR161.2
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.007852 
 
position  991 
target 5' G        C           C 
           UAGUUGCU UUGAUGUAUUG  
           AUCAGUGA AGUUACGUAAC  
miRNA  3'          A           U 
 
 
target: AT4G30480.2 
length: 1165 
miRNA : ath-miR847
length: 21 
 
mfe: -27.0 kcal/mol 
p-value: 0.013531 
 
position  304 
target 5' G  G            A  A   U 
           AU AAGAAGGAGAGG AG UGG  
           UA UUCUUCUUCUCC UC ACU  
miRNA  3' G  G                     
 
 
target: AT4G30480.3 
length: 1176 
miRNA : ath-miR161.2
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.007949 
 
position  1002 
target 5' G        C           C 
           UAGUUGCU UUGAUGUAUUG  
           AUCAGUGA AGUUACGUAAC  
miRNA  3'          A           U 
 
 
target: AT4G30480.3 
length: 1176 
miRNA : ath-miR847
length: 21 
 
mfe: -27.0 kcal/mol 
p-value: 0.013644 
 
position  311 
target 5' G  G            A  A   U 
           AU AAGAAGGAGAGG AG UGG  
           UA UUCUUCUUCUCC UC ACU  
miRNA  3' G  G                     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12248
AccessionTaxon
NP_194777Arabidopsis thaliana
NP_849557 ( AT4G30480 )Arabidopsis thaliana
96841Chlamydomonas reinhardtii
NP_001064904Oryza sativa Japonica Group
1400010301Ostreococcus tauri
27622.m000152Ricinus communis
NP_001031756Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.25.40.104.499990465780058E-2497201IPR011990Tetratricopeptide-like helical
Gene3DG3DSA:1.25.40.104.3999996743974206E-897159IPR011990Tetratricopeptide-like helical
Gene3DG3DSA:1.25.40.102.10000267834025E-3397236IPR011990Tetratricopeptide-like helical
PROSITEPS500050.0105138IPR019734Tetratricopeptide repeat
PROSITEPS502930.0105208IPR013026Tetratricopeptide repeat-containing
PROSITEPS500050.0105138IPR019734Tetratricopeptide repeat
PROSITEPS502930.0105213IPR013026Tetratricopeptide repeat-containing
PROSITEPS500050.0146179IPR019734Tetratricopeptide repeat
PROSITEPS500050.0146179IPR019734Tetratricopeptide repeat
PfamPF005157.4E-4148179IPR001440Tetratricopeptide TPR-1
PfamPF005150.0010999999999999998148179IPR001440Tetratricopeptide TPR-1
PROSITEPS500050.0180213IPR019734Tetratricopeptide repeat
PfamPF005150.008299999999999997181213IPR001440Tetratricopeptide TPR-1