You are querying gene by "AT4G30080".

Locus: AT4G30080 Alias: ARF16

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction transcription factor 16006581
GeneOntology - response to auxin stimulus 16006581

Basic gene information ( show / hide contents )

Locus AT4G30080 | Chromosome: 4 | Strand: -
Description transcription factor
Alias
ARF16( alias )
Gene model
AT4G30080.1 | From: 14703207 | To: 14706342
Sequence
AT4G30080.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
miRNA binding PMID: 15829600
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 16006581
biological_process
pattern specification process PMID: 16006581
response to auxin stimulus PMID: 16006581
cell division PMID: 16006581
root cap development PMID: 16006581
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
arf10-2 arf16-2 16006581 mutant
mARF16-D 16006581 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G30080.1 
length: 2360 
miRNA : ath-miR160a
length: 21 
 
mfe: -44.9 kcal/mol 
p-value: 0.000052 
 
position  1508 
target 5' G   U                U 
           GGU UACAGGGAGCCAGGCA  
           CCG AUGUCCCUCGGUCCGU  
miRNA  3' A   U                  
 
 
target: AT4G30080.1 
length: 2360 
miRNA : ath-miR160b
length: 21 
 
mfe: -44.9 kcal/mol 
p-value: 0.000067 
 
position  1508 
target 5' G   U                U 
           GGU UACAGGGAGCCAGGCA  
           CCG AUGUCCCUCGGUCCGU  
miRNA  3' A   U                  
 
 
target: AT4G30080.1 
length: 2360 
miRNA : ath-miR160c
length: 21 
 
mfe: -44.9 kcal/mol 
p-value: 0.000174 
 
position  1508 
target 5' G   U                U 
           GGU UACAGGGAGCCAGGCA  
           CCG AUGUCCCUCGGUCCGU  
miRNA  3' A   U                  
 
 
target: AT4G30080.1 
length: 2360 
miRNA : ath-miR171b
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.014314 
 
position  248 
target 5' A    C  G            U 
           UGUG UG UGGUAUGGUUCG  
           GCAC AU ACCGUGCCGAGU  
miRNA  3'      U  A            U 
 
 
target: AT4G30080.1 
length: 2360 
miRNA : ath-miR171c
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.015050 
 
position  248 
target 5' A    C  G            U 
           UGUG UG UGGUAUGGUUCG  
           GCAC AU ACCGUGCCGAGU  
miRNA  3'      U  A            U 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT4G30080AT1G74740PositivetransciptN/Amolecular18599455
AT4G30080AT2G14610negativetransciptN/Abiochem17276977
AT4G30080AT4G30610PositivetransciptN/AGO/othersN/A
AT4G30080AT5G18560PositivetransciptN/Amutance17630277
AT4G30080CBF/DREBnegativetransciptN/Abiochem17276977

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_30395
AccessionTaxon
NP_180402Arabidopsis thaliana
NP_567841 ( AT4G30080 )Arabidopsis thaliana
NP_001047488Oryza sativa Japonica Group
NP_001058399Oryza sativa Japonica Group
NP_001064872Oryza sativa Japonica Group
e_gw1.279.55.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_3390006Physcomitrella patens subsp. patens
27494.m000045Ricinus communis
27538.m000327Ricinus communis
30078.m002329Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023627.099999999999995E-21120221IPR003340Transcriptional factor B3
PROSITEPS508630.0120222IPR003340Transcriptional factor B3
PfamPF065078.200000000000062E-30279362IPR010525Auxin response factor
PfamPF023096.300000000000004E-6577663IPR003311AUX/IAA protein
PROSITEPS509620.0585663IPR011525Aux/IAA-ARF-dimerisation