You are querying gene by "AT4G28910".

Locus: AT4G28910 Alias: NINJA

Hormone Evidence Function category Gene Description PMID
Jasmonic acidTransgenic Hormone signal transduction LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink). 20360743

Basic gene information ( show / hide contents )

Locus AT4G28910 | Chromosome: 4 | Strand: -
Description LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).
Alias
NINJA( alias )
Gene model
AT4G28910.2 | From: 14264073 | To: 14266755
AT4G28910.1 | From: 14264073 | To: 14266703
AT4G28910.3 | From: 14264099 | To: 14266644
Sequence
AT4G28910.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G28910.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G28910.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
cellular_component
cellular_component_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
NINJAOE 20360743 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G28910.2 
length: 1915 
miRNA : ath-miR781
length: 21 
 
mfe: -21.7 kcal/mol 
p-value: 0.160983 
 
position  246 
target 5' A    U           G    A 
           AAGU UCUGGAGAAUU CUGA  
           UUCA AGGUCUUUUGA GAUU  
miRNA  3' A    U                  
 
 
target: AT4G28910.3 
length: 1817 
miRNA : ath-miR781
length: 21 
 
mfe: -21.7 kcal/mol 
p-value: 0.151848 
 
position  174 
target 5' A    U           G    A 
           AAGU UCUGGAGAAUU CUGA  
           UUCA AGGUCUUUUGA GAUU  
miRNA  3' A    U                  
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_51160
AccessionTaxon
NP_001078466 ( AT4G28910 )Arabidopsis thaliana
NP_194620Arabidopsis thaliana
NP_849467Arabidopsis thaliana
NP_001056296Oryza sativa Japonica Group
29912.m005468Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF078979.900000000000001E-16356406IPR012463Protein of unknown function DUF1675