You are querying gene by "AT4G28640".

Locus: AT4G28640 Alias: IAA11

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 12036262

Basic gene information ( show / hide contents )

Locus AT4G28640 | Chromosome: 4 | Strand: +
Description response to auxin stimulus
Alias
IAA11( alias )
Gene model
AT4G28640.1 | From: 14142141 | To: 14143975
AT4G28640.2 | From: 14142141 | To: 14143975
Sequence
AT4G28640.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G28640.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
response to auxin stimulus PMID: 12036262
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G28640.1 
length: 1108 
miRNA : ath-miR844
length: 21 
 
mfe: -22.8 kcal/mol 
p-value: 0.009208 
 
position  791 
target 5' U      U      G      U 
           GCUUGU GGCGAU UU CCG  
           CGAAUA UCGUUA AA GGU  
miRNA  3' U      U      G  U     
 
 
target: AT4G28640.2 
length: 1103 
miRNA : ath-miR844
length: 21 
 
mfe: -22.8 kcal/mol 
p-value: 0.009166 
 
position  791 
target 5' U      U      G      U 
           GCUUGU GGCGAU UU CCG  
           CGAAUA UCGUUA AA GGU  
miRNA  3' U      U      G  U     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_58233
AccessionTaxon
NP_001078460Arabidopsis thaliana
NP_194593 ( AT4G28640 )Arabidopsis thaliana
NP_001048522Oryza sativa Japonica Group
29637.m000735Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023095.5e-5157242IPR003311AUX/IAA protein
PfamPF023091.6000000000000007E-4757240IPR003311AUX/IAA protein
PROSITEPS5096232.540137236IPR011525Aux/IAA-ARF-dimerisation
PROSITEPS509620.0137236IPR011525Aux/IAA-ARF-dimerisation