You are querying gene by "AT4G27440".

Locus: AT4G27440 Alias: PORB

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT4G27440 | Chromosome: 4 | Strand: +
Description light-dependent NADPH:protochlorophyllide oxidoreductase B
Alias
PORB( alias )
Gene model
AT4G27440.1 | From: 13725552 | To: 13727359
AT4G27440.2 | From: 13725552 | To: 13727358
Sequence
AT4G27440.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G27440.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protochlorophyllide reductase activity PMID: 7659751
oxidoreductase activity PMID:
cellular_component
chloroplast thylakoid membrane PMID: 15322131
chloroplast PMID: 8624514
biological_process
chlorophyll biosynthetic process PMID: 7659751
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Porphyrin and chlorophyll metabolism protochlorophyllide reductase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G27440.1 
length: 1554 
miRNA : ath-miR843
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.024174 
 
position  1290 
target 5' G  C                U 
           CU GUG GGCUUGGCCUAA  
           GG UAC UCGAGCUGGAUU  
miRNA  3' A  U   U            U 
 
 
target: AT4G27440.2 
length: 1446 
miRNA : ath-miR843
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.022036 
 
position  1290 
target 5' G  C                U 
           CU GUG GGCUUGGCCUAA  
           GG UAC UCGAGCUGGAUU  
miRNA  3' A  U   U            U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_19085
AccessionTaxon
NP_001030948Arabidopsis thaliana
NP_171860Arabidopsis thaliana
136589Chlamydomonas reinhardtii
estExt_fgenesh2_kg.C_1460002Physcomitrella patens subsp. patens
fgenesh2_kg.scaffold_108000004Physcomitrella patens subsp. patens
29983.m003226Ricinus communis
NP_001031731 ( AT4G27440 )Arabidopsis thaliana
NP_194474Arabidopsis thaliana
NP_200230Arabidopsis thaliana
NP_001054274Oryza sativa Japonica Group
fgenesh1_pm.C_Chr_07.0001000025Ostreococcus tauri
28460.m000082Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR194101.4e-18179368IPR002198Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7207.2e-4186369IPR016040NAD(P)-binding domain
TIGRFAMTIGR012891.4e-25186401IPR005979Light-dependent protochlorophyllide reductase
PRINTSPR000813.2e-0790107IPR002347Glucose/ribitol dehydrogenase
PfamPF001061.6e-1890231IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000813.2e-07165176IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000813.2e-07298315IPR002347Glucose/ribitol dehydrogenase