You are querying gene by "AT4G27260".

Locus: AT4G27260 Alias: GH3.5

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus

Basic gene information ( show / hide contents )

Locus AT4G27260 | Chromosome: 4 | Strand: +
Description response to auxin stimulus
Alias
GH3.5( alias )
WES1( alias )
Gene model
AT4G27260.1 | From: 13653615 | To: 13656210
Sequence
AT4G27260.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
indole-3-acetic acid amido synthetase PMID: 15659623
cellular_component
cellular_component_unknown PMID:
biological_process
response to auxin stimulus PMID:
auxin homeostasis PMID: 15659623
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G27260.1 
length: 2246 
miRNA : ath-miR156h
length: 20 
 
mfe: -26.0 kcal/mol 
p-value: 0.006359 
 
position  2038 
target 5' U                   U 
           UGUUCUUUUUUUUUUGUUA  
           ACGAGAGAAAGAAGACAGU  
miRNA  3' C                     
 
 
target: AT4G27260.1 
length: 2246 
miRNA : ath-miR159a
length: 21 
 
mfe: -25.3 kcal/mol 
p-value: 0.064133 
 
position  1953 
target 5' A    A          G     A 
           AGAG CUCUCUUUGA CUAGA  
           UCUC GAGGGAAGUU GGUUU  
miRNA  3' A               A       
 
 
target: AT4G27260.1 
length: 2246 
miRNA : ath-miR159b
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.054576 
 
position  1952 
target 5' G     A          G     A 
           AAGAG CUCUCUUUGA CUAGA  
           UUCUC GAGGGAAGUU GGUUU  
miRNA  3'                  A       
 
 
target: AT4G27260.1 
length: 2246 
miRNA : ath-miR1888
length: 21 
 
mfe: -20.1 kcal/mol 
p-value: 0.082411 
 
position  2006 
target 5' G     U U           U 
           UCUUC C AAUCUUAAUUU  
           AGAAG G UUAGAAUUGAA  
miRNA  3' A     U U           U 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT4G27260IAAPositiveotherN/Abiochem17704230

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_14809
AccessionTaxon
NP_001031874Arabidopsis thaliana
NP_174134Arabidopsis thaliana
NP_196839Arabidopsis thaliana
NP_196840Arabidopsis thaliana
NP_196841Arabidopsis thaliana
NP_196842Arabidopsis thaliana
NP_001044345Oryza sativa Japonica Group
NP_001044467Oryza sativa Japonica Group
NP_001055967Oryza sativa Japonica Group
NP_001060084Oryza sativa Japonica Group
NP_001060085Oryza sativa Japonica Group
NP_001060163Oryza sativa Japonica Group
27533.m000079Ricinus communis
28152.m000872Ricinus communis
29970.m001008Ricinus communis
30128.m008575Ricinus communis
30129.m000366Ricinus communis
NP_173729Arabidopsis thaliana
NP_175299Arabidopsis thaliana
NP_196836Arabidopsis thaliana
NP_199960Arabidopsis thaliana
NP_176159Arabidopsis thaliana
NP_179101Arabidopsis thaliana
NP_179898Arabidopsis thaliana
NP_182296Arabidopsis thaliana
NP_194456 ( AT4G27260 )Arabidopsis thaliana
NP_195455Arabidopsis thaliana
NP_200262Arabidopsis thaliana
NP_849718Arabidopsis thaliana
estExt_Genewise1.C_3230045Physcomitrella patens subsp. patens
NP_175300Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF033211.1e-20824583IPR004993GH3 auxin-responsive promoter