You are querying gene by "AT4G26840".

Locus: AT4G26840 Alias: SUM1

Hormone Evidence Function category Gene Description PMID
salicylic acidTransgenic Hormone signal transduction Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. 20525853

Basic gene information ( show / hide contents )

Locus AT4G26840 | Chromosome: 4 | Strand: +
Description Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.
Alias
SUM1( alias )
SUMO 1( alias )
SUMO1( alias )
Gene model
AT4G26840.1 | From: 13497332 | To: 13498736
Sequence
AT4G26840.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 12482876
cellular_component
nucleus PMID: 17644626
cytoplasm PMID: 17644626
biological_process
protein sumoylation PMID: 12482876
response to heat PMID: 17644626
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   salicylic acid   ]

Genotype PMID Type
sum1-1 amiR-SUM2 20525853 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G26840.1 
length: 715 
miRNA : ath-miR414
length: 21 
 
mfe: -26.8 kcal/mol 
p-value: 0.001178 
 
position  374 
target 5' G  G               C  U 
           GA GAUGGUGAUG AGAU GA  
           CU CUACUACUAC UCUA CU  
miRNA  3' A  G          U         
 
 
target: AT4G26840.1 
length: 715 
miRNA : ath-miR843
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.004687 
 
position  357 
target 5' C               A    G 
           CCGAUG AGCUUGAC UGGA  
           GGUUAC UCGAGCUG AUUU  
miRNA  3' A      U        G      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10582
AccessionTaxon
149066Chlamydomonas reinhardtii
174416Chlamydomonas reinhardtii
NP_001154779Arabidopsis thaliana
NP_194414 ( AT4G26840 )Arabidopsis thaliana
NP_200327Arabidopsis thaliana
NP_001045206Oryza sativa Japonica Group
NP_001045207Oryza sativa Japonica Group
e_gw1.317.29.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_610027Physcomitrella patens subsp. patens
29762.m000499Ricinus communis
30204.m001744Ricinus communis
NP_001119444Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS5005316.3851693IPR019955Ubiquitin supergroup
SMARTSM002131.7e-151889IPR000626Ubiquitin