You are querying gene by "AT4G25500".

Locus: AT4G25500 Alias: AT-SRP40

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT4G25500 | Chromosome: 4 | Strand: +
Description encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.
Alias
AT-SRP40( alias )
ATRSP35( alias )
ATRSP40( alias )
Gene model
AT4G25500.1 | From: 13024581 | To: 13027450
AT4G25500.2 | From: 13026028 | To: 13027450
AT4G25500.3 | From: 13024590 | To: 13027450
Sequence
AT4G25500.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G25500.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G25500.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
RNA binding PMID:
cellular_component
spliceosome PMID: 8989882
nuclear speck PMID: 15133128
biological_process
nuclear mRNA splicing, via spliceosome PMID: 8989882
RNA splicing PMID: 16807317
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G25500.1 
length: 1362 
miRNA : ath-miR414
length: 21 
 
mfe: -26.0 kcal/mol 
p-value: 0.004120 
 
position  1084 
target 5' A   A           U    U 
           GAC GUGAUGGUGGG AUGA  
           CUG UACUACUACUU UACU  
miRNA  3' A   C           C      
 
 
target: AT4G25500.2 
length: 1182 
miRNA : ath-miR414
length: 21 
 
mfe: -26.0 kcal/mol 
p-value: 0.003456 
 
position  904 
target 5' A   A           U    U 
           GAC GUGAUGGUGGG AUGA  
           CUG UACUACUACUU UACU  
miRNA  3' A   C           C      
 
 
target: AT4G25500.3 
length: 1619 
miRNA : ath-miR414
length: 21 
 
mfe: -26.0 kcal/mol 
p-value: 0.005070 
 
position  1341 
target 5' A   A           U    U 
           GAC GUGAUGGUGGG AUGA  
           CUG UACUACUACUU UACU  
miRNA  3' A   C           C      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_23942
AccessionTaxon
NP_001045729Oryza sativa Japonica Group
NP_001078447Arabidopsis thaliana
NP_001154773Arabidopsis thaliana
NP_001154774Arabidopsis thaliana
NP_194280 ( AT4G25500 )Arabidopsis thaliana
NP_200017Arabidopsis thaliana
NP_851174Arabidopsis thaliana
NP_974616Arabidopsis thaliana
estExt_fgenesh1_pg.C_1440043Physcomitrella patens subsp. patens
30147.m014308Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS501020.0141IPR000504RNA recognition motif, RNP-1
PfamPF000760.10999999999999999229IPR000504RNA recognition motif, RNP-1
PROSITEPS5010216.602274IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3304.1E-6355IPR012677Nucleotide-binding, alpha-beta plait
SMARTSM003601.6e-16370IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3304.7e-17488IPR012677Nucleotide-binding, alpha-beta plait
PfamPF000766.9e-15462IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3304.199997713396018E-1749141IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS501020.056127IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3304.0E-1757149IPR012677Nucleotide-binding, alpha-beta plait
SMARTSM003602.3000044072653394E-1757123IPR000504RNA recognition motif, RNP-1
PfamPF000762.6000000000000003E-1058120IPR000504RNA recognition motif, RNP-1
PROSITEPS501020.064135IPR000504RNA recognition motif, RNP-1
SMARTSM003602.3000044072653394E-1765131IPR000504RNA recognition motif, RNP-1
PfamPF000762.700000000000004E-1066128IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3304e-1790182IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS5010215.75097168IPR000504RNA recognition motif, RNP-1
SMARTSM003602.6e-1798164IPR000504RNA recognition motif, RNP-1
PfamPF000764.1e-1399161IPR000504RNA recognition motif, RNP-1