You are querying gene by "AT4G25470".

Locus: AT4G25470 Alias: CBF2

Hormone Evidence Function category Gene Description PMID
salicylic acidMutant Hormone signal transduction Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. 20037472
ethyleneMutant Hormone signal transduction Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. 20037472
abscisic acidMutant Hormone signal transduction Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. 20037472
Jasmonic acidMutant Hormone signal transduction Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. 20037472

Basic gene information ( show / hide contents )

Locus AT4G25470 | Chromosome: 4 | Strand: -
Description Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.
Alias
CBF2( alias )
DREB1C( alias )
FTQ4( alias )
Gene model
AT4G25470.1 | From: 13015287 | To: 13016230
Sequence
AT4G25470.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
transcription activator activity PMID: 9707537
cellular_component
nucleus PMID:
biological_process
response to cold PMID: 16258011
regulation of transcription, DNA-dependent PMID:
cold acclimation PMID: 15356394
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  salicylic acid     ethylene     abscisic acid     jasmonic acid  

[   salicylic acid   ]

Genotype PMID Type
35S:CBF2 20037472 mutant

[   ethylene   ]

Genotype PMID Type
35S:CBF2 20037472 mutant

[   abscisic acid   ]

Genotype PMID Type
35S:CBF2 20037472 mutant

[   jasmonic acid   ]

Genotype PMID Type
35S:CBF2 20037472 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G25470.1 
length: 944 
miRNA : ath-miR829.1
length: 24 
 
mfe: -28.8 kcal/mol 
p-value: 0.000603 
 
position  799 
target 5' U                  U    U 
           UUCCAUU UUUGGUAUUA AGCU  
           AAGGUAG AAACCAUAGU UCGA  
miRNA  3' U       U          C      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_24356
AccessionTaxon
NP_001077764Arabidopsis thaliana
NP_172721Arabidopsis thaliana
NP_176491Arabidopsis thaliana
30147.m014313Ricinus communis
30190.m011119Ricinus communis
30190.m011120Ricinus communis
NP_200012Arabidopsis thaliana
NP_567719 ( AT4G25470 )Arabidopsis thaliana
NP_567720Arabidopsis thaliana
NP_567721Arabidopsis thaliana
NP_001047727Oryza sativa Japonica Group
NP_001053608Oryza sativa Japonica Group
NP_001056661Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.730.102.3e-2249110IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
SuperFamilySSF541712.4e-2349110IPR016177DNA-binding, integrase-type
PfamPF008471.7e-155099IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
SMARTSM003807.1e-3350113IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PROSITEPS5103221.98350107IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003671.1e-095162IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003671.1e-097389IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding