You are querying gene by "AT4G24960".

Locus: AT4G24960 Alias: ATHVA22D

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 12081371

Basic gene information ( show / hide contents )

Locus AT4G24960 | Chromosome: 4 | Strand: +
Description response to abscisic acid stimulus
Alias
ATHVA22D( alias )
HVA22D( alias )
Gene model
AT4G24960.1 | From: 12827947 | To: 12829253
Sequence
AT4G24960.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
response to water deprivation PMID: 12081371
response to cold PMID: 16258011
hyperosmotic salinity response PMID: 12081371
response to abscisic acid stimulus PMID: 12081371
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G24960.1 
length: 792 
miRNA : ath-miR414
length: 21 
 
mfe: -27.6 kcal/mol 
p-value: 0.000906 
 
position  669 
target 5' A         C        U   U 
           UGAUGAUGA UGAUGAGG GUG  
           ACUGCUACU ACUACUUC UAC  
miRNA  3'                        U 
 
 
target: AT4G24960.2 
length: 920 
miRNA : ath-miR414
length: 21 
 
mfe: -27.6 kcal/mol 
p-value: 0.001122 
 
position  797 
target 5' A         C        U   U 
           UGAUGAUGA UGAUGAGG GUG  
           ACUGCUACU ACUACUUC UAC  
miRNA  3'                        U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10829
AccessionTaxon
NP_195390Arabidopsis thaliana
143837Chlamydomonas reinhardtii
29646.m001069Ricinus communis
NP_001119048Arabidopsis thaliana
NP_567713 ( AT4G24960 )Arabidopsis thaliana
NP_568744Arabidopsis thaliana
NP_001067939Oryza sativa Japonica Group
estExt_Genewise1.C_4210010Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_4210007Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_3060012Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_25000037Physcomitrella patens subsp. patens
NP_001068230Oryza sativa Japonica Group
0900010006Ostreococcus tauri
gw1.125.32.1Physcomitrella patens subsp. patens
NP_177592Arabidopsis thaliana
estExt_Genewise1.C_3060059Physcomitrella patens subsp. patens
30147.m014111Ricinus communis
NP_001048116Oryza sativa Japonica Group
NP_001057204Oryza sativa Japonica Group
NP_181810Arabidopsis thaliana
estExt_gwp_gw1.C_600026Physcomitrella patens subsp. patens
29993.m001046Ricinus communis
NP_001060029Oryza sativa Japonica Group
30147.m014467Ricinus communis
NP_001062004Oryza sativa Japonica Group
NP_001052759Oryza sativa Japonica Group
NP_001066204Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR123001.7000029559006478E-40174IPR004345TB2/DP1/HVA22 related protein
PfamPF031346.700000000000008E-22269IPR004345TB2/DP1/HVA22 related protein
PANTHERPTHR123004.5e-5615105IPR004345TB2/DP1/HVA22 related protein
PfamPF031344.1e-3115100IPR004345TB2/DP1/HVA22 related protein