You are querying gene by "AT4G23650".

Locus: AT4G23650 Alias: CDPK6

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. 17032064
GeneOntology - abscisic acid mediated signaling 17032064

Basic gene information ( show / hide contents )

Locus AT4G23650 | Chromosome: 4 | Strand: -
Description Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites.
Alias
CDPK6( alias )
CPK3( alias )
CPK3( alias )
Gene model
AT4G23650.1 | From: 12324768 | To: 12327469
Sequence
AT4G23650.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
calmodulin-dependent protein kinase activity PMID:
kinase activity PMID:
cellular_component
plasma membrane PMID: 16618929
biological_process
regulation of anion channel activity PMID: 17032064
abscisic acid mediated signaling PMID: 17032064
N-terminal protein myristoylation PMID: 12912986
protein amino acid phosphorylation PMID:
regulation of stomatal movement PMID: 17032064
KEGG pathway This gene participates in 3 pathways:
Pathway Enzyme
Inositol phosphate metabolism
Nicotinate and nicotinamide metabolism
Benzoate degradation via CoA ligation
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
cpk3-1 17032064 mutant
cpk3-2 17032064 mutant
cpk3-1cpk6-1 17032064 mutant
cpk3-2cpk6-2 17032064 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G23650.1 
length: 1843 
miRNA : ath-miR413
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.073409 
 
position  517 
target 5' U        G            U 
           GUGU GAA GAGGGGAAUUGU  
           CACG CUU UUCUCUUUGAUA  
miRNA  3'      U   G              
 
 
target: AT4G23650.1 
length: 1843 
miRNA : ath-miR780.1
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.022775 
 
position  1011 
target 5' G   G                 A 
           AUC GCUU ACAGCUGC GGA  
           UGG CGAG UGUCGACG UCU  
miRNA  3'     A    U        A     
 
 
target: AT4G23650.1 
length: 1843 
miRNA : ath-miR869.1
length: 21 
 
mfe: -24.0 kcal/mol 
p-value: 0.029635 
 
position  1598 
target 5' A              U     A 
           AAU CCAGAAUUGG GCCAA  
           UUG GGUCUUAACU UGGUU  
miRNA  3' G   U                A 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT4G23650AT5G24270PositiveotherN/AGO/othersN/A
AT4G23650AT5G35410PositiveotherN/AGO/othersN/A
AT4G23650AT5G47100PositiveotherN/Amutance15208400
AT4G23650ROSnegativeotherN/AGO/othersN/A
AT4G23650[Ca2+]negativeotherN/AGO/othersN/A

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10071
AccessionTaxon
NP_174807Arabidopsis thaliana
NP_181425Arabidopsis thaliana
NP_187677Arabidopsis thaliana
NP_192695Arabidopsis thaliana
NP_195257Arabidopsis thaliana
NP_196107Arabidopsis thaliana
NP_197748Arabidopsis thaliana
NP_565411Arabidopsis thaliana
113407Chlamydomonas reinhardtii
NP_001044575Oryza sativa Japonica Group
NP_001047767Oryza sativa Japonica Group
NP_001048624Oryza sativa Japonica Group
NP_001048842Oryza sativa Japonica Group
NP_001051503Oryza sativa Japonica Group
NP_001051507Oryza sativa Japonica Group
NP_001053670Oryza sativa Japonica Group
NP_001058943Oryza sativa Japonica Group
NP_001065864Oryza sativa Japonica Group
NP_001066266Oryza sativa Japonica Group
NP_001066786Oryza sativa Japonica Group
0300010343Ostreococcus tauri
estExt_Genewise1.C_1080010Physcomitrella patens subsp. patens
estExt_Genewise1.C_1080018Physcomitrella patens subsp. patens
estExt_Genewise1.C_3250028Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_960145Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_143000045Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_316000011Physcomitrella patens subsp. patens
29333.m001078Ricinus communis
29333.m001088Ricinus communis
29728.m000812Ricinus communis
29852.m002000Ricinus communis
30100.m000791Ricinus communis
NP_175485Arabidopsis thaliana
NP_176386Arabidopsis thaliana
NP_188676Arabidopsis thaliana
NP_192381Arabidopsis thaliana
NP_192383Arabidopsis thaliana
NP_193925Arabidopsis thaliana
NP_194096 ( AT4G23650 )Arabidopsis thaliana
NP_196779Arabidopsis thaliana
NP_197437Arabidopsis thaliana
NP_974150Arabidopsis thaliana
28308.m000065Ricinus communis
29761.m000421Ricinus communis
29896.m000119Ricinus communis
30147.m014057Ricinus communis
30169.m006442Ricinus communis
182699Chlamydomonas reinhardtii
126628Chlamydomonas reinhardtii
128451Chlamydomonas reinhardtii
NP_001043612Oryza sativa Japonica Group
NP_001053548Oryza sativa Japonica Group
NP_001056455Oryza sativa Japonica Group
NP_001059775Oryza sativa Japonica Group
NP_001065691Oryza sativa Japonica Group
e_gw1.2.388.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_20082Physcomitrella patens subsp. patens
estExt_fgenesh2_pm.C_970004Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_232000027Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_364000031Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_364000008Physcomitrella patens subsp. patens
NP_001055912Oryza sativa Japonica Group
e_gw1.166.41.1Physcomitrella patens subsp. patens
e_gw1.49.119.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_1870029Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1930044Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_3090051Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1870036Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2050007Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_490144Physcomitrella patens subsp. patens
27777.m000274Ricinus communis
29842.m003597Ricinus communis
30142.m000651Ricinus communis
30170.m014282Ricinus communis
30190.m011343Ricinus communis
estExt_gwp_gw1.C_1380079Physcomitrella patens subsp. patens
NP_001078576Arabidopsis thaliana
NP_197446Arabidopsis thaliana
NP_568281Arabidopsis thaliana
NP_850853Arabidopsis thaliana
NP_001044706Oryza sativa Japonica Group
NP_001050944Oryza sativa Japonica Group
NP_001051652Oryza sativa Japonica Group
NP_001055790Oryza sativa Japonica Group
NP_001060031Oryza sativa Japonica Group
NP_001062383Oryza sativa Japonica Group
NP_001063657Oryza sativa Japonica Group
NP_001066443Oryza sativa Japonica Group
NP_001065180Oryza sativa Japonica Group
127871Chlamydomonas reinhardtii
NP_177612Arabidopsis thaliana
NP_181717Arabidopsis thaliana
NP_190753Arabidopsis thaliana
NP_191312Arabidopsis thaliana
NP_564066Arabidopsis thaliana
NP_973661Arabidopsis thaliana
NP_180708Arabidopsis thaliana
NP_181133Arabidopsis thaliana
NP_192379Arabidopsis thaliana
NP_680596Arabidopsis thaliana
NP_192380Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF561121.2E-9153363IPR011009Protein kinase-like domain
PfamPF000694.199999999999995E-6878336IPR017442Serine/threonine-protein kinase-like domain
SMARTSM002201.3000049540733014E-10278336IPR002290Serine/threonine-protein kinase domain
PROSITEPS500110.078336IPR000719Protein kinase, catalytic domain
PROSITEPS001070.084107IPR017441Protein kinase, ATP binding site
PANTHERPTHR229820.0126528IPR020636Calcium/calmodulin-dependent protein kinase-like
PANTHERPTHR22982:SF130.0126528IPR020642Calcium-dependent protein kinase
PROSITEPS001080.0198210IPR008271Serine/threonine-protein kinase, active site
Gene3DG3DSA:1.10.238.101.400005069073092E-39363517IPR011992EF-hand-like domain
PROSITEPS502220.0379414IPR018249EF-HAND 2
SMARTSM000548.200004068084579E-5383411IPR002048Calcium-binding EF-hand
PfamPF000360.0028000000000000013384409IPR018248EF-hand
PROSITEPS000180.0392404IPR018247EF-Hand 1, calcium-binding site
PROSITEPS502220.0415450IPR018249EF-HAND 2
SMARTSM000540.005499999426327579419447IPR002048Calcium-binding EF-hand
PROSITEPS000180.0428440IPR018247EF-Hand 1, calcium-binding site
PROSITEPS502220.0451485IPR018249EF-HAND 2
SMARTSM000540.06000000322506156455483IPR002048Calcium-binding EF-hand
PROSITEPS000180.0464476IPR018247EF-Hand 1, calcium-binding site
PROSITEPS502220.0486521IPR018249EF-HAND 2
SMARTSM000541.199999857031013E-7490518IPR002048Calcium-binding EF-hand
PfamPF000361.6000000000000008E-6491517IPR018248EF-hand
PROSITEPS000180.0499511IPR018247EF-Hand 1, calcium-binding site