You are querying gene by "AT4G23100".

Locus: AT4G23100 Alias: CAD2

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16262714

Basic gene information ( show / hide contents )

Locus AT4G23100 | Chromosome: 4 | Strand: -
Description response to jasmonic acid stimulus
Alias
CAD2( alias )
GSH1( alias )
PAD2( alias )
RML1( alias )
Gene model
AT4G23100.1 | From: 12103172 | To: 12107310
AT4G23100.2 | From: 12103172 | To: 12107310
Sequence
AT4G23100.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G23100.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
glutamate-cysteine ligase activity PMID: 17144898
cellular_component
chloroplast PMID: 15610346
biological_process
defense response to fungus PMID: 17144898
indole phytoalexin biosynthetic process PMID: 8090752
response to jasmonic acid stimulus PMID: 16262714
response to heat PMID: 15923322
response to ozone PMID: 16262714
defense response to bacterium, incompatible interaction PMID: 8090752
flower development PMID: 11382819
response to cadmium ion PMID: 7770518
glutathione biosynthetic process PMID: 15610346
KEGG pathway This gene participates in 2 pathways:
Pathway Enzyme
Glutamate metabolism glutamate--cysteine ligase
Glutathione metabolism glutamate--cysteine ligase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G23100.1 
length: 2055 
miRNA : ath-miR865-3p
length: 21 
 
mfe: -20.9 kcal/mol 
p-value: 0.028012 
 
position  291 
target 5' U        U        U   A 
           UUGGAU G UUUGAGGA GAA  
           AACCUA U AAACUCCU UUU  
miRNA  3'        U U        U     
 
 
target: AT4G23100.2 
length: 2153 
miRNA : ath-miR865-3p
length: 21 
 
mfe: -20.9 kcal/mol 
p-value: 0.029562 
 
position  291 
target 5' U        U        U   A 
           UUGGAU G UUUGAGGA GAA  
           AACCUA U AAACUCCU UUU  
miRNA  3'        U U        U     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_23237
AccessionTaxon
NP_001031701Arabidopsis thaliana
NP_194041 ( AT4G23100 )Arabidopsis thaliana
181975Chlamydomonas reinhardtii
NP_001054541Oryza sativa Japonica Group
NP_001059579Oryza sativa Japonica Group
e_gw1.02.00.239.1Ostreococcus tauri
estExt_fgenesh1_pg.C_4790010Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_28000151Physcomitrella patens subsp. patens
30190.m011214Ricinus communis
e_gw1.244.55.1Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
TIGRFAMTIGR01436088522IPR011556Glutamate--cysteine ligase, plant
TIGRFAMTIGR014360.088474IPR011556Glutamate--cysteine ligase, plant
PfamPF041075.1e-95139431IPR006336Glutamate--cysteine ligase, GCS2
PfamPF041073.1000000000000525E-92139431IPR006336Glutamate--cysteine ligase, GCS2