You are querying gene by "AT4G21670".

Locus: AT4G21670 Alias: ATCPL1

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction CTD-phosphatase-like 1;encodes a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase 12149434 12149453
GeneOntology - abscisic acid mediated signaling 12149434

Basic gene information ( show / hide contents )

Locus AT4G21670 | Chromosome: 4 | Strand: +
Description CTD-phosphatase-like 1;encodes a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase
Alias
ATCPL1( alias )
CPL1( alias )
FRY2( alias )
Gene model
AT4G21670.1 | From: 11511127 | To: 11517408
Sequence
AT4G21670.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
double-stranded RNA binding PMID:
nucleotide phosphatase activity PMID: 12149434
cellular_component
intracellular PMID:
biological_process
negative regulation of transcription PMID: 12149434
abscisic acid mediated signaling PMID: 12149434
response to abiotic stimulus PMID: 12149434
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
cpl1 12149434 mutant
fry2-1 12149453 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G21670.1 
length: 3774 
miRNA : ath-miR826
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.100625 
 
position  3236 
target 5' A                   U 
           GCG AU UAAAGCCGGACU  
           UGC UA GUUUUGGCCUGA  
miRNA  3' G   A  G            U 
 
 
target: AT4G21670.1 
length: 3774 
miRNA : ath-miR845b
length: 22 
 
mfe: -27.8 kcal/mol 
p-value: 0.004571 
 
position  1716 
target 5' C                      U 
           CAUU AUUUGGUGUCGGAG GA  
           GUAG UAAACCAUAGUCUC CU  
miRNA  3'      U              G    
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT4G21670AT5G52310negativeotherN/Amutance12149434

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_45402
AccessionTaxon
NP_193898 ( AT4G21670 )Arabidopsis thaliana
NP_001047536Oryza sativa Japonica Group
NP_001053381Oryza sativa Japonica Group
e_gw1.42.182.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_310289Physcomitrella patens subsp. patens
29851.m002384Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS509690.0151401IPR004274NLI interacting factor
PfamPF030312.3999999999999997E-5158377IPR004274NLI interacting factor
SMARTSM005772.3000044072653394E-28210386IPR004274NLI interacting factor
SMARTSM003581.699999222840496E-8727791IPR001159Double-stranded RNA-binding
PfamPF000350.05299999999999999731790IPR001159Double-stranded RNA-binding
PROSITEPS501370.0755792IPR001159Double-stranded RNA-binding
PROSITEPS501370.0855925IPR001159Double-stranded RNA-binding
SMARTSM003587.30000590915208E-10856924IPR001159Double-stranded RNA-binding
PfamPF000353.6E-4857921IPR001159Double-stranded RNA-binding