You are querying gene by "AT4G17720".

Locus: AT4G17720 Alias: AT4G17720

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT4G17720 | Chromosome: 4 | Strand: -
Description RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G46870.1); Has 381 Blast hits to 361 proteins in 83 species: Archae - 2; Bacteria - 16; Metazoa - 30; Fungi - 84; Plants - 147; Viruses - 12; Other Eukaryotes - 90 (source: NCBI BLink).
Alias
AT4G17720( alias )
Gene model
AT4G17720.1 | From: 9862459 | To: 9864676
Sequence
AT4G17720.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
nucleic acid binding PMID:
biological_process
biological_process_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G17720.1 
length: 1321 
miRNA : ath-miR861-5p
length: 21 
 
mfe: -24.9 kcal/mol 
p-value: 0.006511 
 
position  187 
target 5' G      A             A 
           UGA GC AUGUUUCUCUAGG  
           ACU CG UAUAAAGAGGUUC  
miRNA  3' A   G                C 
 
 
target: AT4G17720.1 
length: 1321 
miRNA : ath-miR866-5p
length: 21 
 
mfe: -22.3 kcal/mol 
p-value: 0.029033 
 
position  245 
target 5' C      U U     A      G 
           UGGCGA A UCUGU CCUUGA  
           AUUGUU U AGGCA GGAACU  
miRNA  3' A      U       A        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_15517
AccessionTaxon
NP_001078595Arabidopsis thaliana
NP_001078596Arabidopsis thaliana
NP_197186Arabidopsis thaliana
NP_001053727Oryza sativa Japonica Group
NP_001053934Oryza sativa Japonica Group
estExt_Genewise1.C_1000095Physcomitrella patens subsp. patens
estExt_Genewise1.C_170120Physcomitrella patens subsp. patens
gw1.174.82.1Physcomitrella patens subsp. patens
gw1.9.313.1Physcomitrella patens subsp. patens
30073.m002271Ricinus communis
0100010283Ostreococcus tauri
NP_001056594Oryza sativa Japonica Group
NP_199498Arabidopsis thaliana
NP_567536 ( AT4G17720 )Arabidopsis thaliana
gw1.49.184.1Physcomitrella patens subsp. patens
29682.m000595Ricinus communis
NP_001051073Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.70.3303.1999989904634755E-6176IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS501020.0478IPR000504RNA recognition motif, RNP-1
SMARTSM003602.5999994671899463E-6574IPR000504RNA recognition motif, RNP-1
PfamPF000764.499999999999998E-4869IPR000504RNA recognition motif, RNP-1
PANTHERPTHR117322.0000139277203622E-9421253IPR001395Aldo/keto reductase