You are querying gene by "AT4G16280".

Locus: AT4G16280 Alias: FCA

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction FLOWERING TIME CONTROL PROTEIN, encodes a nuclear RNA-binding protein involved in flowering,special to plants 16421562

Basic gene information ( show / hide contents )

Locus AT4G16280 | Chromosome: 4 | Strand: -
Description FLOWERING TIME CONTROL PROTEIN, encodes a nuclear RNA-binding protein involved in flowering,special to plants
Alias
FCA( alias )
Gene model
AT4G16280.2 | From: 9206613 | To: 9214841
AT4G16280.3 | From: 9207179 | To: 9214428
AT4G16280.1 | From: 9207180 | To: 9214841
Sequence
AT4G16280.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G16280.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G16280.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
RNA binding PMID:
cellular_component
chromatin PMID: 17916737
biological_process
chromatin silencing by small RNA PMID: 17916737
embryonic development PMID: 17916737
regulation of flower development PMID: 11457959
embryo sac development PMID: 17916737
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
fca-1 16421562 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

No miRNA interaction information for this gene.

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_36134
AccessionTaxon
0500010164Ostreococcus tauri
e_gw1.158.95.1Physcomitrella patens subsp. patens
gw1.47.198.1Physcomitrella patens subsp. patens
NP_193363Arabidopsis thaliana
NP_849542 ( AT4G16280 )Arabidopsis thaliana
NP_849543Arabidopsis thaliana
NP_001062601Oryza sativa Japonica Group
29889.m003323Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.70.3301.6999992228405136E-7163IPR012677Nucleotide-binding, alpha-beta plait
PANTHERPTHR10432:SF351.6999992228406702E-161428IPR015903Ribonucleoprotein, BRUNO-like
PROSITEPS501020.0149IPR000504RNA recognition motif, RNP-1
PfamPF000760.008299999999999997236IPR000504RNA recognition motif, RNP-1
PANTHERPTHR10432:SF357.9e-8563531IPR015903Ribonucleoprotein, BRUNO-like
PANTHERPTHR10432:SF355.1e-8663670IPR015903Ribonucleoprotein, BRUNO-like
Gene3DG3DSA:3.30.70.3305.3e-19115204IPR012677Nucleotide-binding, alpha-beta plait
Gene3DG3DSA:3.30.70.3305.3e-19115204IPR012677Nucleotide-binding, alpha-beta plait
PRINTSPR009616.7e-05120135IPR002343Paraneoplastic encephalomyelitis antigen
PROSITEPS5010216.415120201IPR000504RNA recognition motif, RNP-1
PROSITEPS5010216.415120201IPR000504RNA recognition motif, RNP-1
SMARTSM003606e-20121197IPR000504RNA recognition motif, RNP-1
SMARTSM003606e-20121197IPR000504RNA recognition motif, RNP-1
PfamPF000768.7e-18122185IPR000504RNA recognition motif, RNP-1
PfamPF000761.4e-17122185IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3304.9e-23211305IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS5010217.660211291IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3304.9e-23211305IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS5010217.660211291IPR000504RNA recognition motif, RNP-1
SMARTSM003601.2e-21212287IPR000504RNA recognition motif, RNP-1
SMARTSM003601.2e-21212287IPR000504RNA recognition motif, RNP-1
PfamPF000762.6e-17213278IPR000504RNA recognition motif, RNP-1
PfamPF000764.1e-17213278IPR000504RNA recognition motif, RNP-1
PRINTSPR009616.7e-05216231IPR002343Paraneoplastic encephalomyelitis antigen
PRINTSPR009616.7e-05231243IPR002343Paraneoplastic encephalomyelitis antigen
PRINTSPR009616.7e-05272289IPR002343Paraneoplastic encephalomyelitis antigen
SuperFamilySSF510456.099999771262168E-9348384IPR001202WW/Rsp5/WWP
PROSITEPS500200.0349382IPR001202WW/Rsp5/WWP
SMARTSM004568.199995064828374E-9350382IPR001202WW/Rsp5/WWP
PfamPF003971.0999999999999998E-6352380IPR001202WW/Rsp5/WWP
SuperFamilySSF510456.2e-09590626IPR001202WW/Rsp5/WWP
PROSITEPS5002012.039591624IPR001202WW/Rsp5/WWP
SMARTSM004561.3e-08592624IPR001202WW/Rsp5/WWP
PfamPF003972.2e-09594622IPR001202WW/Rsp5/WWP