You are querying gene by "AT4G15900".

Locus: AT4G15900 Alias: PRL1

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Encodes a nuclear WD40 domain protein that is imported into the nucleus. 9765207

Basic gene information ( show / hide contents )

Locus AT4G15900 | Chromosome: 4 | Strand: +
Description Encodes a nuclear WD40 domain protein that is imported into the nucleus.
Alias
PRL1( alias )
Gene model
AT4G15900.1 | From: 9023743 | To: 9027681
Sequence
AT4G15900.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 10220464
negative regulator of basal transcription activity PMID: 9765207
nucleotide binding PMID:
cellular_component
nucleus PMID: 9765207
biological_process
defense response to fungus PMID: 17575050
defense response signaling pathway, resistance gene-independent PMID: 17575050
cotyledon development PMID: 18223036
fruit development PMID: 18223036
defense response to bacterium PMID: 17575050
defense response signaling pathway, resistance gene-dependent PMID: 17575050
root development PMID: 18223036
sugar mediated signaling PMID: 18223036
negative regulation of transcription PMID: 10220464
proteolysis PMID: 18223036
response to glucose stimulus PMID: 9765207
hormone-mediated signaling PMID: 18223036
leaf development PMID: 18223036
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
prl1-1 9765207 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G15900.1 
length: 1731 
miRNA : ath-miR397a
length: 21 
 
mfe: -27.5 kcal/mol 
p-value: 0.010550 
 
position  478 
target 5' U      U              A 
           GUCAAC GCUGCAUU AAUGG  
           UAGUUG CGACGUGA UUACU  
miRNA  3' G               G       
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT4G15900ABRESnegativeotherN/Amolecular9765207
AT4G15900AT1G20440negativeotherN/Amolecular9765207
AT4G15900AT2G38050negativeotherN/Amolecular9765207
AT4G15900AT3G23050negativeotherN/Amolecular9765207
AT4G15900AT3G63210negativeotherN/Amolecular9765207
AT4G15900AT5G05690Positivemodification PN/Amolecular9765207
AT4G15900AT5G05690PositiveotherN/Amutance8612270
AT4G15900ATHKAP2Positivemodification PN/Amolecular9765207
AT4G15900transcriptionnegativetransciptN/Amolecular9765207

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11746
AccessionTaxon
NP_193325 ( AT4G15900 )Arabidopsis thaliana
NP_566557Arabidopsis thaliana
48734Chlamydomonas reinhardtii
NP_001050058Oryza sativa Japonica Group
e_gw1.08.00.142.1Ostreococcus tauri
e_gw1.169.38.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_4020035Physcomitrella patens subsp. patens
29726.m004060Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:2.130.10.101.9e-73133463IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.6e-75163485IPR011046WD40 repeat-like-containing domain
SMARTSM003206.7e-11165204IPR001680WD40 repeat
PfamPF004003.6e-12166204IPR019781WD40 repeat, subgroup
PROSITEPS5008215.855172213IPR019782WD40 repeat 2
PROSITEPS5029456.421172472IPR017986WD40-repeat-containing domain
PRINTSPR003202e-07191205IPR020472G-protein beta WD-40 repeat, region
SMARTSM003202e-06207246IPR001680WD40 repeat
PfamPF004001.4e-05209246IPR019781WD40 repeat, subgroup
PROSITEPS5008213.316214255IPR019782WD40 repeat 2
SMARTSM003207e-09249288IPR001680WD40 repeat
PfamPF004001.9e-08251288IPR019781WD40 repeat, subgroup
PROSITEPS5008213.783256297IPR019782WD40 repeat 2
PRINTSPR003202e-07275289IPR020472G-protein beta WD-40 repeat, region
PROSITEPS00678NA275289IPR019775WD40 repeat, conserved site
SMARTSM003209e-06291330IPR001680WD40 repeat
PfamPF004006.7e-07297330IPR019781WD40 repeat, subgroup
PROSITEPS5008215.187298339IPR019782WD40 repeat 2
PRINTSPR003202e-07317331IPR020472G-protein beta WD-40 repeat, region
PROSITEPS00678NA317331IPR019775WD40 repeat, conserved site
SMARTSM003201.2333371IPR001680WD40 repeat
PfamPF004000.00028335367IPR019781WD40 repeat, subgroup
SMARTSM003200.14375413IPR001680WD40 repeat
PROSITEPS500828.604382422IPR019782WD40 repeat 2
PfamPF004001.2389413IPR019781WD40 repeat, subgroup
SMARTSM003200.037425463IPR001680WD40 repeat
PfamPF004000.012435463IPR019781WD40 repeat, subgroup