You are querying gene by "AT4G15560".

Locus: AT4G15560 Alias: CLA

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone biosynthesis encodes a protein with 1-deoxy-D-xylulose-5-phosphate synthase 11264287

Basic gene information ( show / hide contents )

Locus AT4G15560 | Chromosome: 4 | Strand: +
Description encodes a protein with 1-deoxy-D-xylulose-5-phosphate synthase
Alias
CLA( alias )
CLA1( alias )
DEF( alias )
DXPS2( alias )
DXS( alias )
Gene model
AT4G15560.1 | From: 8883905 | To: 8887563
Sequence
AT4G15560.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
1-deoxy-D-xylulose-5-phosphate synthase activity PMID: 10982425
cellular_component
chloroplast PMID:
biological_process
isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway PMID: 12777052
chlorophyll biosynthetic process PMID: 10982425
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Biosynthesis of steroids 1-deoxy-D-xylulose-5-phosphate synthase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
cla1-1 10982425 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G15560.1 
length: 2776 
miRNA : ath-miR161.2
length: 21 
 
mfe: -22.6 kcal/mol 
p-value: 0.031770 
 
position  1091 
target 5' A   C  C  G            G 
           AGU CA CU UUGGUGCAUUGA  
           UCA GU GA AGUUACGUAACU  
miRNA  3' A         A              
 
 
target: AT4G15560.1 
length: 2776 
miRNA : ath-miR397b
length: 21 
 
mfe: -25.1 kcal/mol 
p-value: 0.029219 
 
position  2358 
target 5' G                 C   U 
           AUC ACGGUGCAC CAG UGA  
           UAG UGCUACGUG GUU ACU  
miRNA  3' G   U         A         
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT4G15560AT1G02400negativemetabolismN/AmolecularN/A
AT4G15560AT1G15550negativemetabolismN/AmolecularN/A
AT4G15560AT1G50960negativemetabolismN/AmolecularN/A
AT4G15560AT1G79460negativemetabolismN/AmolecularN/A
AT4G15560AT1G80330negativemetabolismN/AmolecularN/A
AT4G15560AT1G80340negativemetabolismN/AmolecularN/A
AT4G15560AT2G29090negativeotherN/Amutance15044947
AT4G15560AT4G21200negativemetabolismN/AmolecularN/A
AT4G15560AT4G21690negativemetabolismN/AmolecularN/A

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11955
AccessionTaxon
NP_193291 ( AT4G15560 )Arabidopsis thaliana
NP_196699Arabidopsis thaliana
NP_566686Arabidopsis thaliana
NP_850620Arabidopsis thaliana
196568Chlamydomonas reinhardtii
NP_001055524Oryza sativa Japonica Group
NP_001056773Oryza sativa Japonica Group
NP_001059086Oryza sativa Japonica Group
e_gw1.02.00.80.1Ostreococcus tauri
e_gw1.139.67.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_220042Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_110156Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_42000033Physcomitrella patens subsp. patens
27506.m000052Ricinus communis
29235.m000235Ricinus communis
29726.m003963Ricinus communis
29912.m005583Ricinus communis
NP_001078570Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
TIGRFAMTIGR002040.077710IPR005477Deoxyxylulose-5-phosphate synthase
PROSITEPS008010.0102121IPR005474Transketolase, N-terminal
PfamPF006769.699999999999998E-4184248IPR001017Dehydrogenase, E1 component
PfamPF027792.5000000000000137E-40399560IPR005475Transketolase-like, pyrimidine-binding domain
SMARTSM008618.899930119832044E-66399564IPR005475Transketolase-like, pyrimidine-binding domain
PROSITEPS008020.0505521IPR020826Transketolase binding site
SuperFamilySSF529221.8E-40572710IPR009014Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
Gene3DG3DSA:3.40.50.9201.299999244681832E-26577686IPR015941Transketolase-like, C-terminal
PfamPF027808.70000000000003E-30578701IPR005476Transketolase, C-terminal