You are querying gene by "AT4G12400".

Locus: AT4G12400 Alias: AT4G12400

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT4G12400 | Chromosome: 4 | Strand: -
Description stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 39093 Blast hits to 15822 proteins in 911 species: Archae - 1416; Bacteria - 11135; Metazoa - 8936; Fungi - 1950; Plants - 2455; Viruses - 7; Other Eukaryotes - 13194 (source: NCBI BLink).
Alias
AT4G12400( alias )
Gene model
AT4G12400.1 | From: 7338672 | To: 7341358
AT4G12400.2 | From: 7338656 | To: 7341358
Sequence
AT4G12400.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G12400.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
binding PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
response to high light intensity PMID: 17059409
response to stress PMID:
response to hydrogen peroxide PMID: 17059409
response to heat PMID: 17059409
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G12400.1 
length: 2066 
miRNA : ath-miR773
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.033935 
 
position  1187 
target 5' A                   C 
           AGA AAGAGCUGG AGCAA  
           UCU UUUUCGACC UCGUU  
miRNA  3' C   G         U     U 
 
 
target: AT4G12400.1 
length: 2066 
miRNA : ath-miR776
length: 21 
 
mfe: -21.6 kcal/mol 
p-value: 0.096109 
 
position  295 
target 5' A                 A    G 
           GACG CGA AGAAGACU UAGA  
           UUGU GUU UCUUCUGA AUCU  
miRNA  3'      A   A               
 
 
target: AT4G12400.2 
length: 2006 
miRNA : ath-miR773
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.032912 
 
position  1185 
target 5' A                   C 
           AGA AAGAGCUGG AGCAA  
           UCU UUUUCGACC UCGUU  
miRNA  3' C   G         U     U 
 
 
target: AT4G12400.2 
length: 2006 
miRNA : ath-miR776
length: 21 
 
mfe: -21.6 kcal/mol 
p-value: 0.092691 
 
position  293 
target 5' A                 A    G 
           GACG CGA AGAAGACU UAGA  
           UUGU GUU UCUUCUGA AUCU  
miRNA  3'      A   A               
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11644
AccessionTaxon
NP_001031620Arabidopsis thaliana
NP_172691Arabidopsis thaliana
NP_176461Arabidopsis thaliana
NP_192977 ( AT4G12400 )Arabidopsis thaliana
136069Chlamydomonas reinhardtii
NP_001047563Oryza sativa Japonica Group
NP_001053429Oryza sativa Japonica Group
e_gw1.06.00.119.1Ostreococcus tauri
30190.m010995Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.25.40.102.500009099162002E-352113IPR011990Tetratricopeptide-like helical
SMARTSM000280.0017999995165467722235IPR019734Tetratricopeptide repeat
PROSITEPS500050.0235IPR019734Tetratricopeptide repeat
PROSITEPS502930.02470IPR013026Tetratricopeptide repeat-containing
Gene3DG3DSA:1.25.40.102.4e-352113IPR011990Tetratricopeptide-like helical
SMARTSM000280.0023235IPR019734Tetratricopeptide repeat
PROSITEPS5000510.207235IPR019734Tetratricopeptide repeat
PROSITEPS5029337.6912470IPR013026Tetratricopeptide repeat-containing
PfamPF005150.15735IPR001440Tetratricopeptide TPR-1
PfamPF005150.00018735IPR001440Tetratricopeptide TPR-1
SMARTSM000280.33000000596287763669IPR019734Tetratricopeptide repeat
PROSITEPS500050.03669IPR019734Tetratricopeptide repeat
SMARTSM000280.433669IPR019734Tetratricopeptide repeat
PROSITEPS500058.3193669IPR019734Tetratricopeptide repeat
SMARTSM000281.9000006847787025E-670103IPR019734Tetratricopeptide repeat
PROSITEPS500050.070103IPR019734Tetratricopeptide repeat
SMARTSM000282.6e-0670103IPR019734Tetratricopeptide repeat
PROSITEPS5000512.83370103IPR019734Tetratricopeptide repeat
PfamPF005159.600000000000012E-571103IPR001440Tetratricopeptide TPR-1
PfamPF005151.1e-0771103IPR001440Tetratricopeptide TPR-1
SMARTSM007270.3599999892926219131170IPR006636Heat shock chaperonin-binding
SMARTSM000280.06800000139618531230263IPR019734Tetratricopeptide repeat
PROSITEPS500050.0230263IPR019734Tetratricopeptide repeat
SMARTSM000280.09230263IPR019734Tetratricopeptide repeat
PROSITEPS500058.526230263IPR019734Tetratricopeptide repeat
Gene3DG3DSA:1.25.40.106.1000265614981E-50236487IPR011990Tetratricopeptide-like helical
Gene3DG3DSA:1.25.40.105.8e-50236487IPR011990Tetratricopeptide-like helical
SMARTSM000288.800002658362785E-5264297IPR019734Tetratricopeptide repeat
PROSITEPS500050.0264297IPR019734Tetratricopeptide repeat
SMARTSM000280.00012264297IPR019734Tetratricopeptide repeat
PROSITEPS500056.756264297IPR019734Tetratricopeptide repeat
PfamPF005154.499999999999998E-4267292IPR001440Tetratricopeptide TPR-1
PfamPF005155.4e-07267292IPR001440Tetratricopeptide TPR-1
SMARTSM0002818.000000106278666305342IPR019734Tetratricopeptide repeat
SMARTSM0002824305342IPR019734Tetratricopeptide repeat
PROSITEPS500050.0309342IPR019734Tetratricopeptide repeat
PROSITEPS500055.074309342IPR019734Tetratricopeptide repeat
SMARTSM000280.0011000002989614837369402IPR019734Tetratricopeptide repeat
PROSITEPS500050.0369402IPR019734Tetratricopeptide repeat
SMARTSM000280.0014369402IPR019734Tetratricopeptide repeat
PROSITEPS5000510.414369402IPR019734Tetratricopeptide repeat
PfamPF005150.004999999999999998375402IPR001440Tetratricopeptide TPR-1
PfamPF005155.9e-06375402IPR001440Tetratricopeptide TPR-1
SMARTSM000287.899996098894172E-5403436IPR019734Tetratricopeptide repeat
PROSITEPS500050.0403436IPR019734Tetratricopeptide repeat
SMARTSM000280.0001403436IPR019734Tetratricopeptide repeat
PROSITEPS500058.467403436IPR019734Tetratricopeptide repeat
PfamPF005154.900000000000004E-4404436IPR001440Tetratricopeptide TPR-1
PfamPF005155.8e-07404436IPR001440Tetratricopeptide TPR-1
SMARTSM000281.1999998570310131E-5437470IPR019734Tetratricopeptide repeat
PROSITEPS500050.0437470IPR019734Tetratricopeptide repeat
SMARTSM000281.6e-05437470IPR019734Tetratricopeptide repeat
PROSITEPS5000510.650437470IPR019734Tetratricopeptide repeat
PfamPF005155.3E-4438470IPR001440Tetratricopeptide TPR-1
PfamPF005156.3e-07438470IPR001440Tetratricopeptide TPR-1
SMARTSM007274.999998119564295E-8507546IPR006636Heat shock chaperonin-binding