You are querying gene by "AT4G11260".

Locus: AT4G11260 Alias: ATSGT1B

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction 12782725 15208392
GeneOntology - auxin mediated signaling pathway 12782725
jasmonic acidGeneOntology - jasmonic acid mediated signaling pathway 12782725

Basic gene information ( show / hide contents )

Locus AT4G11260 | Chromosome: 4 | Strand: -
Description
Alias
ATSGT1B( alias )
EDM1( alias )
ETA3( alias )
RPR1( alias )
SGT1B( alias )
Gene model
AT4G11260.1 | From: 6851273 | To: 6853856
Sequence
AT4G11260.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 11847307
cellular_component
SCF ubiquitin ligase complex PMID: 12782725
biological_process
defense response to fungus PMID: 11847308
jasmonic acid mediated signaling pathway PMID: 12782725
ubiquitin-dependent protein catabolic process PMID: 12782725
auxin mediated signaling pathway PMID: 12782725
protein catabolic process PMID: 15976272
embryonic development ending in seed dormancy PMID: 16619029
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
axr1-12 eta2-1 15208392 mutant
eta3 tir1-1 12782725 mutant
eta3 12782725 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G11260.1 
length: 1456 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.2 kcal/mol 
p-value: 0.042700 
 
position  1005 
target 5' G    A            U   G 
           GAGA GGAUGAGAAGCU GAU  
           CUUU CUUGUUCUUUGA CUA  
miRNA  3' A    G                  
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT4G11260AT3G62980PositiveotherN/Amutance12782725
AT4G11260AT5G49980PositiveotherN/Amutance12782725

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11623
AccessionTaxon
NP_001031704Arabidopsis thaliana
NP_192865 ( AT4G11260 )Arabidopsis thaliana
NP_194088Arabidopsis thaliana
NP_849429Arabidopsis thaliana
108398Chlamydomonas reinhardtii
NP_001043620Oryza sativa Japonica Group
fgenesh1_pg.C_Chr_07.0001000046Ostreococcus tauri
30169.m006578Ricinus communis
30190.m011280Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.25.40.106.500008052301378E-272119IPR011990Tetratricopeptide-like helical
SMARTSM000280.18999999024834108235IPR019734Tetratricopeptide repeat
PROSITEPS500050.0235IPR019734Tetratricopeptide repeat
PROSITEPS502930.02103IPR013026Tetratricopeptide repeat-containing
SMARTSM000280.48000000740742953669IPR019734Tetratricopeptide repeat
PROSITEPS500050.03669IPR019734Tetratricopeptide repeat
SMARTSM000280.00739999967908914270103IPR019734Tetratricopeptide repeat
PROSITEPS500050.070103IPR019734Tetratricopeptide repeat
PROSITEPS512030.0157246IPR007052CS-like domain
SuperFamilySSF497643.9E-19158249IPR008978HSP20-like chaperone
PfamPF049697.799999999999993E-15161236IPR017447CS domain
PROSITEPS510480.0268358IPR007699SGS
PfamPF050028.499999999999947E-28275356IPR007699SGS