You are querying gene by "AT4G05320".

Locus: AT4G05320 Alias: UBQ10

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16307367

Basic gene information ( show / hide contents )

Locus AT4G05320 | Chromosome: 4 | Strand: +
Description response to salicylic acid stimulus
Alias
UBQ10( alias )
Gene model
AT4G05320.2 | From: 2718168 | To: 2720305
AT4G05320.3 | From: 2718187 | To: 2719985
AT4G05320.4 | From: 2718210 | To: 2720130
AT4G05320.5 | From: 2718168 | To: 2720130
AT4G05320.1 | From: 2718168 | To: 2720130
AT4G05320.6 | From: 2718185 | To: 2719985
Sequence
AT4G05320.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G05320.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G05320.4 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G05320.5 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G05320.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G05320.6 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 8382544
biological_process
response to salicylic acid stimulus PMID: 16307367
protein modification process PMID: 8385509
aging PMID: 9617812
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G05320.1 
length: 1432 
miRNA : ath-miR420
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.005682 
 
position  1208 
target 5' C     C              C 
           UGCGU UUCGUGGU GGUUU  
           ACGUA AGGCACUA UCAAA  
miRNA  3'       A        A     U 
 
 
target: AT4G05320.2 
length: 1835 
miRNA : ath-miR420
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.007276 
 
position  1436 
target 5' C     C              C 
           UGCGU UUCGUGGU GGUUU  
           ACGUA AGGCACUA UCAAA  
miRNA  3'       A        A     U 
 
 
target: AT4G05320.2 
length: 1835 
miRNA : ath-miR860
length: 21 
 
mfe: -22.2 kcal/mol 
p-value: 0.034887 
 
position  1711 
target 5' U   A                 C 
           GUA AUAGUCCAAU UGUUGG  
           UAU UAUCAGGUUA AUAACU  
miRNA  3'     G          G        
 
 
target: AT4G05320.3 
length: 1550 
miRNA : ath-miR420
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.006157 
 
position  1411 
target 5' C     C              C 
           UGCGU UUCGUGGU GGUUU  
           ACGUA AGGCACUA UCAAA  
miRNA  3'       A        A     U 
 
 
target: AT4G05320.4 
length: 1625 
miRNA : ath-miR420
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.006455 
 
position  1401 
target 5' C     C              C 
           UGCGU UUCGUGGU GGUUU  
           ACGUA AGGCACUA UCAAA  
miRNA  3'       A        A     U 
 
 
target: AT4G05320.5 
length: 1204 
miRNA : ath-miR420
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.004745 
 
position  980 
target 5' C     C              C 
           UGCGU UUCGUGGU GGUUU  
           ACGUA AGGCACUA UCAAA  
miRNA  3'       A        A     U 
 
 
target: AT4G05320.6 
length: 1270 
miRNA : ath-miR420
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.005019 
 
position  1191 
target 5' C     C              C 
           UGCGU UUCGUGGU GGUUU  
           ACGUA AGGCACUA UCAAA  
miRNA  3'       A        A     U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10200
AccessionTaxon
NP_001031824Arabidopsis thaliana
NP_001118922Arabidopsis thaliana
NP_568112Arabidopsis thaliana
NP_849292Arabidopsis thaliana
NP_851029Arabidopsis thaliana
NP_974516Arabidopsis thaliana
estExt_fgenesh1_pm.C_Chr_12.00010021Ostreococcus tauri
estExt_fgenesh1_pg.C_170152Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_88000082Physcomitrella patens subsp. patens
30169.m006323Ricinus communis
NP_001078353Arabidopsis thaliana
NP_566357Arabidopsis thaliana
NP_567291Arabidopsis thaliana
NP_568397Arabidopsis thaliana
NP_849299Arabidopsis thaliana
NP_849300 ( AT4G05320 )Arabidopsis thaliana
NP_849301Arabidopsis thaliana
140045Chlamydomonas reinhardtii
NP_001045980Oryza sativa Japonica Group
NP_001053957Oryza sativa Japonica Group
NP_001058378Oryza sativa Japonica Group
estExt_Genewise1.C_2270098Physcomitrella patens subsp. patens
estExt_Genewise1.C_460139Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_175000036Physcomitrella patens subsp. patens
fgenesh2_pm.scaffold_72000009Physcomitrella patens subsp. patens
NP_001031585Arabidopsis thaliana
NP_001118936Arabidopsis thaliana
NP_567247Arabidopsis thaliana
NP_567286Arabidopsis thaliana
NP_849291Arabidopsis thaliana
estExt_Genewise1.C_170154Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3510013Physcomitrella patens subsp. patens
NP_176714Arabidopsis thaliana
NP_565812Arabidopsis thaliana
196236Chlamydomonas reinhardtii
NP_001058338Oryza sativa Japonica Group
NP_001059668Oryza sativa Japonica Group
NP_001063337Oryza sativa Japonica Group
gw1.07.00.466.1Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM002133e-35172IPR000626Ubiquitin
PROSITEPS5005330.452176IPR019955Ubiquitin supergroup
SMARTSM002133e-35172IPR000626Ubiquitin
PROSITEPS5005330.452176IPR019955Ubiquitin supergroup
SMARTSM002133e-35172IPR000626Ubiquitin
PROSITEPS5005330.452176IPR019955Ubiquitin supergroup
PfamPF002407.4e-34674IPR000626Ubiquitin
PfamPF002401.4e-33674IPR000626Ubiquitin
PfamPF002401.1e-33674IPR000626Ubiquitin
PRINTSPR003482.7e-381131IPR019956Ubiquitin subgroup
PRINTSPR003487.4e-381131IPR019956Ubiquitin subgroup
PRINTSPR003484.5e-381131IPR019956Ubiquitin subgroup
PROSITEPS00299NA2752IPR019954Ubiquitin conserved site
PROSITEPS00299NA2752IPR019954Ubiquitin conserved site
PROSITEPS00299NA2752IPR019954Ubiquitin conserved site
PRINTSPR003482.7e-383252IPR019956Ubiquitin subgroup
PRINTSPR003487.4e-383252IPR019956Ubiquitin subgroup
PRINTSPR003484.5e-383252IPR019956Ubiquitin subgroup
PRINTSPR003482.7e-385374IPR019956Ubiquitin subgroup
PRINTSPR003487.4e-385374IPR019956Ubiquitin subgroup
PRINTSPR003484.5e-385374IPR019956Ubiquitin subgroup
SMARTSM002133e-3577148IPR000626Ubiquitin
PROSITEPS5005330.45277152IPR019955Ubiquitin supergroup
SMARTSM002133e-3577148IPR000626Ubiquitin
PROSITEPS5005330.45277152IPR019955Ubiquitin supergroup
SMARTSM002133e-3577148IPR000626Ubiquitin
PROSITEPS5005330.45277152IPR019955Ubiquitin supergroup
PfamPF002407.4e-3482150IPR000626Ubiquitin
PfamPF002401.4e-3382150IPR000626Ubiquitin
PfamPF002401.1e-3382150IPR000626Ubiquitin
PROSITEPS00299NA103128IPR019954Ubiquitin conserved site
PROSITEPS00299NA103128IPR019954Ubiquitin conserved site
PROSITEPS00299NA103128IPR019954Ubiquitin conserved site
SMARTSM002133e-35153224IPR000626Ubiquitin
PROSITEPS5005330.452153228IPR019955Ubiquitin supergroup
SMARTSM002133e-35153224IPR000626Ubiquitin
PROSITEPS5005330.452153228IPR019955Ubiquitin supergroup
SMARTSM002133e-35153224IPR000626Ubiquitin
PROSITEPS5005330.452153228IPR019955Ubiquitin supergroup
PfamPF002407.4e-34158226IPR000626Ubiquitin
PfamPF002401.4e-33158226IPR000626Ubiquitin
PfamPF002401.1e-33158226IPR000626Ubiquitin
PROSITEPS00299NA179204IPR019954Ubiquitin conserved site
PROSITEPS00299NA179204IPR019954Ubiquitin conserved site
PROSITEPS00299NA179204IPR019954Ubiquitin conserved site
SMARTSM002133e-35229300IPR000626Ubiquitin
PROSITEPS5005330.452229304IPR019955Ubiquitin supergroup
SMARTSM002133e-35229300IPR000626Ubiquitin
PROSITEPS5005330.452229304IPR019955Ubiquitin supergroup
SMARTSM002133e-35229300IPR000626Ubiquitin
PROSITEPS5005330.452229304IPR019955Ubiquitin supergroup
PfamPF002407.4e-34234302IPR000626Ubiquitin
PfamPF002401.4e-33234302IPR000626Ubiquitin
PfamPF002401.1e-33234302IPR000626Ubiquitin
PROSITEPS00299NA255280IPR019954Ubiquitin conserved site
PROSITEPS00299NA255280IPR019954Ubiquitin conserved site
PROSITEPS00299NA255280IPR019954Ubiquitin conserved site
SMARTSM002133e-35305376IPR000626Ubiquitin
PROSITEPS5005330.452305380IPR019955Ubiquitin supergroup
SMARTSM002133e-35305376IPR000626Ubiquitin
PROSITEPS5005330.452305380IPR019955Ubiquitin supergroup
PfamPF002401.4e-33310378IPR000626Ubiquitin
PfamPF002401.1e-33310378IPR000626Ubiquitin
PROSITEPS00299NA331356IPR019954Ubiquitin conserved site
PROSITEPS00299NA331356IPR019954Ubiquitin conserved site
SMARTSM002133e-35381452IPR000626Ubiquitin
PROSITEPS5005330.452381456IPR019955Ubiquitin supergroup
PfamPF002401.4e-33386454IPR000626Ubiquitin
PROSITEPS00299NA407432IPR019954Ubiquitin conserved site