You are querying gene by "AT4G05160".

Locus: AT4G05160 Alias: AT4G05160

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - jasmonic acid biosynthetic process 15677481

Basic gene information ( show / hide contents )

Locus AT4G05160 | Chromosome: 4 | Strand: +
Description jasmonic acid biosynthetic process
Alias
AT4G05160( alias )
Gene model
AT4G05160.1 | From: 2664383 | To: 2666705
Sequence
AT4G05160.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
4-coumarate-CoA ligase activity PMID:
fatty-acyl-CoA synthase activity PMID: 15677481
cellular_component
peroxisome PMID: 15677481
biological_process
jasmonic acid biosynthetic process PMID: 15677481
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Stilbene, coumarine and lignin biosynthesis 4-coumarate--CoA ligase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G05160.1 
length: 1861 
miRNA : ath-miR172a
length: 21 
 
mfe: -24.7 kcal/mol 
p-value: 0.025069 
 
position  713 
target 5' U      U       U    A  A 
           UGCAGC UCGUUAA GGUU CU  
           ACGUCG AGUAGUU CUAA GA  
miRNA  3' U      U                 
 
 
target: AT4G05160.1 
length: 1861 
miRNA : ath-miR172b
length: 21 
 
mfe: -24.7 kcal/mol 
p-value: 0.025129 
 
position  713 
target 5' U      U       U    A  A 
           UGCAGC UCGUUAA GGUU CU  
           ACGUCG AGUAGUU CUAA GA  
miRNA  3' U      U                 
 
 
target: AT4G05160.1 
length: 1861 
miRNA : ath-miR172c
length: 21 
 
mfe: -24.9 kcal/mol 
p-value: 0.030147 
 
position  713 
target 5' U      U       U    A  A 
           UGCAGC UCGUUAA GGUU CU  
           ACGUCG AGUAGUU CUAA GA  
miRNA  3' G      U                 
 
 
target: AT4G05160.1 
length: 1861 
miRNA : ath-miR172d
length: 21 
 
mfe: -24.9 kcal/mol 
p-value: 0.029198 
 
position  713 
target 5' U      U       U    A  A 
           UGCAGC UCGUUAA GGUU CU  
           ACGUCG AGUAGUU CUAA GA  
miRNA  3' G      U                 
 
 
target: AT4G05160.1 
length: 1861 
miRNA : ath-miR172e
length: 21 
 
mfe: -24.7 kcal/mol 
p-value: 0.040532 
 
position  713 
target 5' U      U       U    A  A 
           UGCAGC UCGUUAA GGUU CU  
           ACGUCG AGUAGUU CUAA GG  
miRNA  3' U      U                 
 
 
target: AT4G05160.1 
length: 1861 
miRNA : ath-miR390a
length: 21 
 
mfe: -30.7 kcal/mol 
p-value: 0.011472 
 
position  922 
target 5' U G             U   C 
           G GUUGUUCCUCCUG GUU  
           C CGAUAGGGAGGAC CGA  
miRNA  3' C G             U   A 
 
 
target: AT4G05160.1 
length: 1861 
miRNA : ath-miR390b
length: 21 
 
mfe: -30.7 kcal/mol 
p-value: 0.012068 
 
position  922 
target 5' U G             U   C 
           G GUUGUUCCUCCUG GUU  
           C CGAUAGGGAGGAC CGA  
miRNA  3' C G             U   A 
 
 
target: AT4G05160.1 
length: 1861 
miRNA : ath-miR865-3p
length: 21 
 
mfe: -20.5 kcal/mol 
p-value: 0.031681 
 
position  1021 
target 5' C    U A        U       U 
           UUGG A AGAUUUGA GGAGGAA  
           AACC U UUUAAACU CCUUUUU  
miRNA  3'        A                  
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10074
AccessionTaxon
NP_173472Arabidopsis thaliana
NP_173474Arabidopsis thaliana
NP_198628Arabidopsis thaliana
NP_564115Arabidopsis thaliana
NP_973872Arabidopsis thaliana
NP_001046069Oryza sativa Japonica Group
NP_001047819Oryza sativa Japonica Group
NP_001058252Oryza sativa Japonica Group
NP_001061353Oryza sativa Japonica Group
NP_001061935Oryza sativa Japonica Group
e_gw1.02.00.157.1Ostreococcus tauri
e_gw1.167.67.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_200030Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_710053Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_185000045Physcomitrella patens subsp. patens
28429.m000109Ricinus communis
30073.m002251Ricinus communis
30131.m006921Ricinus communis
NP_192425 ( AT4G05160 )Arabidopsis thaliana
NP_190468Arabidopsis thaliana
NP_001054304Oryza sativa Japonica Group
e_gw1.18.145.1Physcomitrella patens subsp. patens
30147.m013735Ricinus communis
30190.m011196Ricinus communis
29589.m001235Ricinus communis
30078.m002285Ricinus communis
NP_001048992Oryza sativa Japonica Group
NP_175579Arabidopsis thaliana
NP_176686Arabidopsis thaliana
NP_188761Arabidopsis thaliana
NP_849844Arabidopsis thaliana
NP_001077697Arabidopsis thaliana
NP_188760Arabidopsis thaliana
NP_849793Arabidopsis thaliana
e_gw1.12.278.1Physcomitrella patens subsp. patens
e_gw1.38.65.1Physcomitrella patens subsp. patens
e_gw1.6.71.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_520075Physcomitrella patens subsp. patens
NP_001048867Oryza sativa Japonica Group
30170.m014327Ricinus communis
NP_173473Arabidopsis thaliana
113915Chlamydomonas reinhardtii
28872.m000246Ricinus communis
gw1.04.00.473.1Ostreococcus tauri
29929.m004700Ricinus communis
30190.m010972Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF005014.499999999999962E-10556471IPR000873AMP-dependent synthetase/ligase
PROSITEPS004550.0195206IPR020845AMP-binding, conserved site