You are querying gene by "AT4G03560".

Locus: AT4G03560 Alias: ATCCH1

Hormone Evidence Function category Gene Description PMID
jasmonic acidMutant Hormone biosynthesis Encodes a depolarization-activated Ca(2+) channel. 17253984
GeneOntology - jasmonic acid biosynthetic process 17253984

Basic gene information ( show / hide contents )

Locus AT4G03560 | Chromosome: 4 | Strand: +
Description Encodes a depolarization-activated Ca(2+) channel.
Alias
ATCCH1( alias )
ATTPC1( alias )
FOU2( alias )
TPC1( alias )
Gene model
AT4G03560.1 | From: 1580140 | To: 1585964
Sequence
AT4G03560.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
voltage-gated calcium channel activity PMID: 11577183
calcium channel activity PMID: 11577183
cellular_component
vacuolar membrane PMID: 18028262
plasma membrane PMID: 11577183
plant-type vacuole PMID: 15772667
biological_process
jasmonic acid biosynthetic process PMID: 17253984
seed germination PMID: 15772667
regulation of stomatal movement PMID: 15772667
calcium ion transport PMID: 11577183
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
fou2 17253984 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G03560.1 
length: 2674 
miRNA : ath-miR171b
length: 21 
 
mfe: -29.0 kcal/mol 
p-value: 0.006325 
 
position  231 
target 5' G      G        A    G 
           GUGGUG UGGUACGG UCGG  
           CACUAU ACCGUGCC AGUU  
miRNA  3' G      A        G      
 
 
target: AT4G03560.1 
length: 2674 
miRNA : ath-miR171c
length: 21 
 
mfe: -29.0 kcal/mol 
p-value: 0.006711 
 
position  231 
target 5' G      G        A    G 
           GUGGUG UGGUACGG UCGG  
           CACUAU ACCGUGCC AGUU  
miRNA  3' G      A        G      
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT4G0356013-LOXnegativeotherN/Amutance17253984

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_17942
AccessionTaxon
NP_567258 ( AT4G03560 )Arabidopsis thaliana
NP_001043858Oryza sativa Japonica Group
29983.m003190Ricinus communis
e_gw1.258.69.1Physcomitrella patens subsp. patens
e_gw1.45.105.1Physcomitrella patens subsp. patens
29983.m003189Ricinus communis
estExt_fgenesh1_pg.C_Chr_01.00010467Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF005202.1e-10123304IPR005821Ion transport
PROSITEPS5022210.022322357IPR018249EF-HAND 2
SMARTSM000540.18326354IPR002048Calcium-binding EF-hand
Gene3DG3DSA:1.10.238.105.4e-05327392IPR011992EF-hand-like domain
PROSITEPS502228.627363398IPR018249EF-HAND 2
SMARTSM000543367395IPR002048Calcium-binding EF-hand
PfamPF005201.7e-29467671IPR005821Ion transport