You are querying gene by "AT4G03190".

Locus: AT4G03190 Alias: AFB1

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone receptor TIR1 homolog F-box protein 15992545
GeneOntology - auxin binding 15917797

Basic gene information ( show / hide contents )

Locus AT4G03190 | Chromosome: 4 | Strand: -
Description TIR1 homolog F-box protein
Alias
AFB1( alias )
ATGER1( alias )
ATGRH1( alias )
GRH1( alias )
Gene model
AT4G03190.1 | From: 1404887 | To: 1407139
Sequence
AT4G03190.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
auxin binding PMID: 15917797
protein binding PMID: 12008900
ubiquitin-protein ligase activity PMID:
cellular_component
nucleus PMID: 15992545
nuclear SCF ubiquitin ligase complex PMID: 15992545
biological_process
response to auxin stimulus PMID: 15992545
ubiquitin-dependent protein catabolic process PMID: 11019805
negative regulation of transcription by glucose PMID: 12008900
developmental growth PMID: 15992545
response to molecule of bacterial origin PMID: 16627744
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
afb1 15992545 mutant
wxr1 tir1-1 afb2-1 afb3-1 20562234 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G03190.1 
length: 2061 
miRNA : ath-miR393a
length: 22 
 
mfe: -34.5 kcal/mol 
p-value: 0.000478 
 
position  1587 
target 5' A    C                U 
           GA C AUGCGAUCCCUUUGGA  
           CU G UACGCUAGGGAAACCU  
miRNA  3' C  A U                  
 
 
target: AT4G03190.1 
length: 2061 
miRNA : ath-miR393b
length: 22 
 
mfe: -34.5 kcal/mol 
p-value: 0.001360 
 
position  1587 
target 5' A    C                U 
           GA C AUGCGAUCCCUUUGGA  
           CU G UACGCUAGGGAAACCU  
miRNA  3' C  A U                  
 
 
target: AT4G03190.1 
length: 2061 
miRNA : ath-miR834
length: 21 
 
mfe: -31.9 kcal/mol 
p-value: 0.003623 
 
position  510 
target 5' G               A    C 
           UAUCGCUGCUAUUGC GCUA  
           AUGGUGGCGAUGACG UGGU  
miRNA  3' A               A      
 
 
target: AT4G03190.1 
length: 2061 
miRNA : ath-miR864-5p
length: 21 
 
mfe: -23.1 kcal/mol 
p-value: 0.039886 
 
position  333 
target 5' G                    C 
           UUGGGGU GGUUAUGCUUGG  
           AACUUCA UUAGUAUGGACU  
miRNA  3' A       G              
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_24415
AccessionTaxon
NP_563915Arabidopsis thaliana
NP_566800Arabidopsis thaliana
NP_567135Arabidopsis thaliana
NP_567255 ( AT4G03190 )Arabidopsis thaliana
NP_001052659Oryza sativa Japonica Group
NP_001054666Oryza sativa Japonica Group
estExt_fgenesh1_pm.C_160001Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_440022Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1370051Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1960072Physcomitrella patens subsp. patens
29647.m002022Ricinus communis
29933.m001427Ricinus communis
30131.m006863Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM002566.20000124972815E-5546IPR001810F-box domain, cyclin-like